RetrogeneDB ID: | retro_ocun_195 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:83730860..83731292(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021908 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000010363 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.3 % |
Parental protein coverage: | 99.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR |
GKCRGLRTARKLRS.RRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR | |
Retrocopy | GKCRGLRTARKLRSRRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR |
Parental | VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP |
VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP | |
Retrocopy | VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP |
Parental | RS |
RS | |
Retrocopy | RS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 7 .56 RPM | 62 .64 RPM |
SRP017611_kidney | 13 .99 RPM | 95 .17 RPM |
SRP017611_liver | 5 .01 RPM | 40 .39 RPM |