RetrogeneDB ID: retro_mputfur_1298

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897071.1:183432..183861(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000002602
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RPS23
• Ensembl ID: ENSMPUG00000008114
• Aliases: None
• Description: ribosomal protein S23 [Source:HGNC Symbol;Acc:10410]

Sequence

>retro_mputfur_1298
ATGGGCAAGTGTCGCAGTCTCCTTACTGACAGGAAGCTCCACAGCCACCGACGAGATCAGAAGTGGCATGATAAACCGTA
CAAGAAAGCCCTTGTGGGCACAGCCCTGAAGGCCAGCCCTTTTGGAGGCACGTCCCAGGCAAAAGGAATTGTGTTGGAAA
AAGTAGGGGTTGAAGCCAAGCAGCCAAATTCTGCCATCAGGAAGTGTGTCAGGGTCCAGCTGATCAAGAATGGCAAAAAA
ATCACAGCCTTTGTACCCAAGGATGGTTGTTTGATTTTTATGAGGAAAATGATGAGGTTCTGGTTGCTGGATTTGGTCAC
AAAGGTTATGCTGTCAGTGACATTCCTGGAGTTTGCTTTAAGGTTATCAAAAGTAGCCAATGTCTCTCTTTTGGCCTTAT
ACAAAGGCAAGAAGGAAAGACGAAGATCA

Alignment

ORF - retro_mputfur_1298 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.52 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV
          MGKCR.L.T.RKL.SHRRDQKWHDK.YKKA..GTALKA.PFGG.S.AKGIVLEKVGVEAKQPNSAIRKCV
Retrocopy MGKCRSLLTDRKLHSHRRDQKWHDKPYKKALVGTALKASPFGGTSQAKGIVLEKVGVEAKQPNSAIRKCV

Parental  RVQLIKNGKKITAFVPNDGCL-NFIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVSLLALYKGKK
          RVQLIKNGKKITAFVP.DGCL..F.EENDEVLVAGFG.KG.AV.DIPGV.FKV..KVANVSLLALYKGKK
Retrocopy RVQLIKNGKKITAFVPKDGCL<DFYEENDEVLVAGFGHKGYAVSDIPGVCFKVI>KVANVSLLALYKGKK

Parental  ERPRS
          ER.RS
Retrocopy ERRRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1298 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1298 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 59 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013358	3 retrocopies	retro_btau_173, retro_btau_205, retro_btau_80,
Callithrix jacchus	ENSCJAG00000011247	2 retrocopies	retro_cjac_126, retro_cjac_256,
Dipodomys ordii	ENSDORG00000001813	2 retrocopies	retro_dord_187, retro_dord_93,
Homo sapiens	ENSG00000186468	6 retrocopies	retro_hsap_1778, retro_hsap_2940, retro_hsap_3107, retro_hsap_3287, retro_hsap_3989, retro_hsap_4697,
Gorilla gorilla	ENSGGOG00000025014	6 retrocopies	retro_ggor_1316, retro_ggor_2038, retro_ggor_2131, retro_ggor_2237, retro_ggor_2677, retro_ggor_286,
Macropus eugenii	ENSMEUG00000012931	1 retrocopy	retro_meug_811,
Macaca mulatta	ENSMMUG00000003578	4 retrocopies	retro_mmul_1239, retro_mmul_1974, retro_mmul_2305, retro_mmul_852,
Monodelphis domestica	ENSMODG00000020255	3 retrocopies	retro_mdom_1518, retro_mdom_1612, retro_mdom_395,
Mustela putorius furo	ENSMPUG00000008114	1 retrocopy	retro_mputfur_1298 ,
Nomascus leucogenys	ENSNLEG00000013203	3 retrocopies	retro_nleu_1353, retro_nleu_1909, retro_nleu_764,
Oryctolagus cuniculus	ENSOCUG00000010363	2 retrocopies	retro_ocun_195, retro_ocun_95,
Pteropus vampyrus	ENSPVAG00000002083	4 retrocopies	retro_pvam_1483, retro_pvam_782, retro_pvam_80, retro_pvam_922,
Rattus norvegicus	ENSRNOG00000016580	12 retrocopies	retro_rnor_100, retro_rnor_1394, retro_rnor_149, retro_rnor_1691, retro_rnor_1941, retro_rnor_1959, retro_rnor_1982, retro_rnor_2119, retro_rnor_2182, retro_rnor_2492, retro_rnor_525, retro_rnor_559,
Sarcophilus harrisii	ENSSHAG00000008347	2 retrocopies	retro_shar_257, retro_shar_348,
Sus scrofa	ENSSSCG00000014133	1 retrocopy	retro_sscr_92,
Vicugna pacos	ENSVPAG00000009427	7 retrocopies	retro_vpac_195, retro_vpac_239, retro_vpac_393, retro_vpac_543, retro_vpac_56, retro_vpac_598, retro_vpac_81,