Parental gene:

RPL12, ENSG00000197958

Aliases:RPL12, L12
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Human (Homo sapiens)
Coordinates:9:130209952..130213684(-)


>ENSG00000197958
ATGCCGCCGAAGTTCGACCCCAACGAGATCAAAGTCGTATACCTGAGGTGCACCGGAGGTGAAGTCGGTGCCACTTCTGC
CCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAAGTTGGTGATGACATTGCCAAGGCAACGGGTGACTGGA
AGGGCCTGAGGATTACAGTGAAACTGACCATTCAGAACAGACAGGCCCAGATTGAGGTGGTGCCTTCTGCCTCTGCCCTG
ATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAAACATTAAACACAGTGGGAATATCACTTTTGA
TGAGATTGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAGAACTCTCTGGAACCATTAAAGAGATCCTGG
GGACTGCCCAGTCAGTGGGCTGTAATGTTGATGGCCGCCATCCTCATGACATCATCGATGACATCAACAGTGGTGCTGTG
GAATGCCCAGCCAGTTAA

Library Parental gene expression (RPM)
bodymap2_liver 146 .20 RPM
bodymap2_lung 420 .61 RPM
bodymap2_breast 274 .19 RPM
bodymap2_adipose 334 .37 RPM
bodymap2_adrenal 375 .59 RPM
bodymap2_skeletal_muscle 532 .70 RPM
bodymap2_thyroid 203 .98 RPM
bodymap2_prostate 765 .31 RPM
bodymap2_colon 494 .79 RPM
bodymap2_testis 314 .22 RPM
bodymap2_brain 87 .48 RPM
bodymap2_heart 91 .33 RPM
bodymap2_white_blood_cells 691 .71 RPM
bodymap2_lymph_node 493 .85 RPM
bodymap2_ovary 470 .84 RPM
bodymap2_kidney 286 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 ortholog_one2many 1 retrogene
retro_cjac_221,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2one 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 possible_ortholog 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
retro_mmus_28,
Oryctolagus cuniculus ENSOCUG00000004902 ortholog_one2one 9 retrogenes
retro_ocun_1246, retro_ocun_1632, retro_ocun_1895, retro_ocun_318, retro_ocun_329, retro_ocun_520, retro_ocun_556, retro_ocun_677, retro_ocun_880,
Ochotona princeps ENSOPRG00000011078 ortholog_one2one 21 retrogenes
retro_opri_100, retro_opri_1018, retro_opri_1066, retro_opri_1110, retro_opri_1210, retro_opri_1217, retro_opri_221, retro_opri_265, retro_opri_336, retro_opri_353, retro_opri_418, retro_opri_461, retro_opri_479, retro_opri_576, retro_opri_638, retro_opri_648, retro_opri_658, retro_opri_672, retro_opri_835, retro_opri_905, retro_opri_986,
Pongo abelii ENSPPYG00000019622 possible_ortholog 44 retrogenes
retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
retro_ptro_21,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_117 91.98 98.18
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2. retro_hsap_127 90.76 72.12
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3. retro_hsap_137 71.26 65.15
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4. retro_hsap_584 94.90 95.15
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5. retro_hsap_643 71.76 50.91
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6. retro_hsap_705 83.90 71.52
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7. retro_hsap_719 85.82 80.61
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8. retro_hsap_768 72.89 100.00
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9. retro_hsap_868 77.65 62.88
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10. retro_hsap_983 89.76 100.00
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11. retro_hsap_1064 92.07 99.39
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12. retro_hsap_1210 60.20 59.39
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13. retro_hsap_1311 76.74 78.18
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14. retro_hsap_1359 72.62 100.00
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15. retro_hsap_1401 95.76 100.00
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16. retro_hsap_1592 89.16 100.00
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17. retro_hsap_1644 67.53 91.52
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18. retro_hsap_1790 87.39 67.27
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19. retro_hsap_1850 92.14 84.24
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20. retro_hsap_1880 56.35 74.55
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21. retro_hsap_1895 64.07 97.58
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22. retro_hsap_2005 87.27 100.00
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23. retro_hsap_2031 89.94 95.76
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24. retro_hsap_2099 85.11 56.36
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25. retro_hsap_2123 77.25 100.00
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26. retro_hsap_2202 99.39 100.00
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27. retro_hsap_2311 86.99 72.73
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28. retro_hsap_2381 87.88 100.00
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29. retro_hsap_2428 84.15 98.18
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30. retro_hsap_2436 98.80 100.00
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31. retro_hsap_2456 96.97 100.00
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32. retro_hsap_2642 71.57 60.61
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33. retro_hsap_3388 88.57 84.24
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34. retro_hsap_3405 57.26 69.09
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35. retro_hsap_3458 92.73 100.00
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36. retro_hsap_3544 74.75 58.79
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37. retro_hsap_3578 95.15 100.00
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38. retro_hsap_3709 86.06 100.00
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39. retro_hsap_4107 66.28 52.12
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40. retro_hsap_4121 66.46 97.58
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41. retro_hsap_4746 75.29 100.00
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Download FASTA sequences of all ENSG00000197958 retrocopies