RetrogeneDB ID: | retro_opri_461 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_12688:8685..9180(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOPRG00000011078 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 80.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MPPKFDPNEIKVVYLRCTGGEVGATSA-LAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQA |
MPPKFDPN.IK.V.L..TGGEVGATSA.LAPK.GPLGLSPKK.G.DIAK.T.DWKGL.ITVK.TIQ..Q. | |
Retrocopy | MPPKFDPNAIKLVCLQYTGGEVGATSA<LAPKTGPLGLSPKKLGYDIAKVTRDWKGLQITVKMTIQI*QE |
Parental | QIEVVPSASALII-ALKEPPRDRKKQKNIKHSGNITFDEIVNIARQ-MRHRSLARELSGTIKEILGTAQS |
QIEVV..AS.LII.A.KEP.RD.KKQKNIKHSGNITFDEIVNI..Q..RH.SLAR.LSGTIK.ILGTAQS | |
Retrocopy | QIEVVLMASVLIIKAFKEPSRDHKKQKNIKHSGNITFDEIVNINVQ>VRH*SLARKLSGTIKQILGTAQS |
Parental | VGCNVDGRHPHDIIDDINSGAVECPAS |
..CNVDGRH.HDIIDDINSGAVECPAS | |
Retrocopy | MSCNVDGRHLHDIIDDINSGAVECPAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |