RetrogeneDB ID: | retro_ocun_677 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 13:140666079..140666405(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 57.66 % |
Parental protein coverage: | 56.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FRYSARRRPRCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIG-PLGLSPK |
F..SA..RPR.N....S.I.VHPTPGAST.PPKF....IK..YLR.T..E....S..AP.I..PLGLS.. | |
Retrocopy | FLSSAQKRPRSNFVQ*S*IGVHPTPGASTTPPKFSLSKIKATYLRGTSEEAHTMSTPAPRIS<PLGLSL* |
Parental | KVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALI |
KV.DD.AKATGDWKG..IT.K.T.....A..E..PSASALI | |
Retrocopy | KVADDVAKATGDWKGPWITEKVT-RGQRAHTEALPSASALI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 280 .15 RPM |
SRP017611_liver | 0 .00 RPM | 100 .66 RPM |