Parental gene:

RPL12, ENSOPRG00000011078

Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_2295:481772..483727(-)


>ENSOPRG00000011078
ATGCCACCCAAGTTCGACCCTAACGAGATTAAAGTCGTGTACCTGCGGTGCACCGGCGGCGAGGTGGGTGCCACGTCCGC
CCTGGCCCCCAAGATCGGCCCCCTGGGCCTGTCTCCGAAGAAGGTGGGAGATGACATTGCCAAGGCCACCGGGGACTGGA
AGGGCCTGCGGATCACGGTGAAGCTGACCATCCAGAACCGACAAGCGCAGATCGAGGTGGTGCCGTCGGCCTCTGCCCTG
ATCATCGCCCTCAAGGAGCCGCCCAGGGACCGCAAGAAACAGAAGAACATCAAACACAGCGGGAACATCACATTTGATGA
AATTGTCAACATCGCCCGGCAGATGCGCCACCGATCCTTAGCCAGAGAACTTTCCGGAACCATCAAAGAGATTCTGGGGA
CTGCCCAGTCGGTGGGCTGCAATGTGGATGGCCGCCACCCACACGACATCATAGATGACATCAACAGTGGTGCAGTGGAA
TGCCCAGCTAGCTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006963 possible_ortholog 3 retrogenes
retro_btau_102, retro_btau_2, retro_btau_5,
Callithrix jacchus ENSCJAG00000018082 ortholog_one2many 1 retrogene
retro_cjac_221,
Homo sapiens ENSG00000197958 ortholog_one2one 41 retrogenes
retro_hsap_1064, retro_hsap_117, retro_hsap_1210, retro_hsap_127, retro_hsap_1311, retro_hsap_1359, retro_hsap_137, retro_hsap_1401, retro_hsap_1592, retro_hsap_1644, retro_hsap_1790, retro_hsap_1850, retro_hsap_1880, retro_hsap_1895, retro_hsap_2005, retro_hsap_2031, retro_hsap_2099, retro_hsap_2123, retro_hsap_2202, retro_hsap_2311, retro_hsap_2381, retro_hsap_2428, retro_hsap_2436, retro_hsap_2456, retro_hsap_2642, retro_hsap_3388, retro_hsap_3405, retro_hsap_3458, retro_hsap_3544, retro_hsap_3578, retro_hsap_3709, retro_hsap_4107, retro_hsap_4121, retro_hsap_4746, retro_hsap_584, retro_hsap_643, retro_hsap_705, retro_hsap_719, retro_hsap_768, retro_hsap_868, retro_hsap_983,
Latimeria chalumnae ENSLACG00000015373 ortholog_one2many 3 retrogenes
retro_lcha_31, retro_lcha_87, retro_lcha_92,
Macropus eugenii ENSMEUG00000007380 possible_ortholog 12 retrogenes
retro_meug_1102, retro_meug_1107, retro_meug_1199, retro_meug_1357, retro_meug_1426, retro_meug_1611, retro_meug_1634, retro_meug_1691, retro_meug_1953, retro_meug_265, retro_meug_479, retro_meug_493,
Macaca mulatta ENSMMUG00000000422 ortholog_one2many 2 retrogenes
retro_mmul_1823, retro_mmul_53,
Monodelphis domestica ENSMODG00000004571 possible_ortholog 9 retrogenes
retro_mdom_1061, retro_mdom_1177, retro_mdom_1192, retro_mdom_1526, retro_mdom_1719, retro_mdom_1871, retro_mdom_1947, retro_mdom_309, retro_mdom_925,
Mus musculus ENSMUSG00000038900 possible_ortholog 1 retrogene
retro_mmus_28,
Oryctolagus cuniculus ENSOCUG00000004902 ortholog_one2one 9 retrogenes
retro_ocun_1246, retro_ocun_1632, retro_ocun_1895, retro_ocun_318, retro_ocun_329, retro_ocun_520, retro_ocun_556, retro_ocun_677, retro_ocun_880,
Otolemur garnettii ENSOGAG00000000597 possible_ortholog 120 retrogenes
retro_ogar_1002, retro_ogar_1010, retro_ogar_1049, retro_ogar_1069, retro_ogar_1106, retro_ogar_1117, retro_ogar_1137, retro_ogar_1140, retro_ogar_1181, retro_ogar_1188, retro_ogar_1189, retro_ogar_1192, retro_ogar_1230, retro_ogar_1247, retro_ogar_1263, retro_ogar_1295, retro_ogar_1331, retro_ogar_1341, retro_ogar_1408, retro_ogar_1409, retro_ogar_1427, retro_ogar_1457, retro_ogar_1464, retro_ogar_1489, retro_ogar_1503, retro_ogar_1534, retro_ogar_1536, retro_ogar_1550, retro_ogar_1569, retro_ogar_1570, retro_ogar_1579, retro_ogar_1606, retro_ogar_1621, retro_ogar_1709, retro_ogar_1717, retro_ogar_1739, retro_ogar_1789, retro_ogar_1803, retro_ogar_1810, retro_ogar_1825, retro_ogar_1836, retro_ogar_1881, retro_ogar_1885, retro_ogar_1916, retro_ogar_1923, retro_ogar_1937, retro_ogar_1941, retro_ogar_1948, retro_ogar_1969, retro_ogar_1975, retro_ogar_1987, retro_ogar_2055, retro_ogar_2115, retro_ogar_2134, retro_ogar_2172, retro_ogar_2179, retro_ogar_2180, retro_ogar_2208, retro_ogar_2209, retro_ogar_2230, retro_ogar_2291, retro_ogar_2323, retro_ogar_2387, retro_ogar_2483, retro_ogar_2495, retro_ogar_2511, retro_ogar_2570, retro_ogar_2620, retro_ogar_2622, retro_ogar_2624, retro_ogar_2749, retro_ogar_2768, retro_ogar_2809, retro_ogar_2904, retro_ogar_2935, retro_ogar_2945, retro_ogar_2953, retro_ogar_2980, retro_ogar_3004, retro_ogar_3017, retro_ogar_303, retro_ogar_3035, retro_ogar_3128, retro_ogar_3135, retro_ogar_3164, retro_ogar_3394, retro_ogar_3489, retro_ogar_395, retro_ogar_398, retro_ogar_412, retro_ogar_427, retro_ogar_452, retro_ogar_480, retro_ogar_512, retro_ogar_513, retro_ogar_538, retro_ogar_560, retro_ogar_587, retro_ogar_624, retro_ogar_636, retro_ogar_653, retro_ogar_655, retro_ogar_667, retro_ogar_668, retro_ogar_669, retro_ogar_683, retro_ogar_700, retro_ogar_734, retro_ogar_737, retro_ogar_744, retro_ogar_747, retro_ogar_775, retro_ogar_818, retro_ogar_853, retro_ogar_868, retro_ogar_901, retro_ogar_927, retro_ogar_956, retro_ogar_962, retro_ogar_964,
Pongo abelii ENSPPYG00000019622 ortholog_one2many 44 retrogenes
retro_pabe_1009, retro_pabe_1084, retro_pabe_1095, retro_pabe_1127, retro_pabe_1159, retro_pabe_1223, retro_pabe_1246, retro_pabe_1309, retro_pabe_1361, retro_pabe_1471, retro_pabe_1509, retro_pabe_1577, retro_pabe_1659, retro_pabe_1660, retro_pabe_1736, retro_pabe_1794, retro_pabe_1806, retro_pabe_1820, retro_pabe_1969, retro_pabe_1982, retro_pabe_2000, retro_pabe_2149, retro_pabe_2328, retro_pabe_2531, retro_pabe_2802, retro_pabe_2859, retro_pabe_2928, retro_pabe_2947, retro_pabe_3002, retro_pabe_3146, retro_pabe_3185, retro_pabe_3276, retro_pabe_3363, retro_pabe_3405, retro_pabe_3482, retro_pabe_3693, retro_pabe_488, retro_pabe_521, retro_pabe_604, retro_pabe_620, retro_pabe_757, retro_pabe_815, retro_pabe_831, retro_pabe_904,
Pan troglodytes ENSPTRG00000022808 possible_ortholog 1 retrogene
retro_ptro_21,
Rattus norvegicus ENSRNOG00000016220 possible_ortholog 4 retrogenes
retro_rnor_166, retro_rnor_236, retro_rnor_247, retro_rnor_312,
Sarcophilus harrisii ENSSHAG00000017864 possible_ortholog 8 retrogenes
retro_shar_140, retro_shar_266, retro_shar_284, retro_shar_335, retro_shar_346, retro_shar_453, retro_shar_508, retro_shar_646,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_100 99.39 100.00
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2. retro_opri_221 71.97 79.88
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3. retro_opri_265 70.00 66.46
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4. retro_opri_336 73.85 78.66
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5. retro_opri_353 82.42 98.78
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6. retro_opri_418 78.44 100.00
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7. retro_opri_461 80.24 100.00
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8. retro_opri_479 78.67 89.02
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9. retro_opri_576 79.17 85.98
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10. retro_opri_638 71.97 79.88
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11. retro_opri_648 78.26 81.71
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12. retro_opri_658 96.36 100.00
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13. retro_opri_672 73.85 78.66
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14. retro_opri_835 78.63 77.44
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15. retro_opri_905 78.44 100.00
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16. retro_opri_986 82.42 98.78
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17. retro_opri_1018 99.39 100.00
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18. retro_opri_1066 51.61 56.10
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19. retro_opri_1110 70.00 66.46
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20. retro_opri_1210 78.44 100.00
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21. retro_opri_1217 67.96 60.37
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Download FASTA sequences of all ENSOPRG00000011078 retrocopies