RetrogeneDB ID: | retro_opri_1066 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_6476:85270..85545(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOPRG00000011078 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 51.61 % |
Parental protein coverage: | 56.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DWKGLRITVKLTIQNRQ-AQIEVVPSASALIIALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSL |
D.KG..IT.K...Q.R..A.....P.....I.ALKE.PR.RKKQKN.K.SGN.TF..IV..........L | |
Retrocopy | D*KGPTITGKQNVQKRR<APSAAHPASTLIIKALKETPRGRKKQKNMKPSGNTTFKDIVRSTHKTQC*WL |
Parental | ARELSGTIKEILGTAQSVGCNVD |
AREL.GTI.EILG.AQ.VGC... | |
Retrocopy | ARELYGTI*EILGIAQPVGCTLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |