RetrogeneDB ID: | retro_ocun_880 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 16:73250304..73250759(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 81.05 % |
Parental protein coverage: | 77.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PGASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPK-KVGDDIAKATGDWKGLRITVKLTI |
PGASTMPPKF..N.IKV.YL.CTGG.V.ATSALAPKIGPLGL.PK..V.DDI.KATGDWKGLR.TVKLTI | |
Retrocopy | PGASTMPPKFKRNQIKVIYLWCTGGKVDATSALAPKIGPLGLPPK<MVCDDIGKATGDWKGLRVTVKLTI |
Parental | QNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILG |
QNRQ.QI.VVPS.SALIIKALKE..RD.KKQKNI.HSGNITFDEIVN.A.Q..H.SLARELSGTI.EILG | |
Retrocopy | QNRQTQIKVVPSGSALIIKALKESRRDSKKQKNIEHSGNITFDEIVNFAQQICH*SLARELSGTINEILG |
Parental | TAQSVGCNVDGRH |
TAQS.GC.VDG.H | |
Retrocopy | TAQSMGCYVDGCH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 280 .15 RPM |
SRP017611_liver | 0 .00 RPM | 100 .66 RPM |