RetrogeneDB ID: | retro_ocun_556 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:38554009..38554420(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 56.85 % |
Parental protein coverage: | 71.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | FRYSARRRP-RCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPK |
F...A.RRP..CN.L......VH.TP.AS..P.K.DP.EIKV.Y..CTGGEV.A.SALAPK..PL.LS.K | |
Retrocopy | FFFLAQRRP<KCNFLWLAQSQVHRTPTASDTPSKCDPSEIKVIYVGCTGGEVCAISALAPKMDPLSLSRK |
Parental | K-VGDDIAKATGDWKGLRITVKLTIQ-NRQAQIEVVPS-ASALIIKALKEPPRDR-KKQK-NIKHSGNIT |
....DDI.K.T.DWKGLRI.VKL....NR.......PS.....I.KA.KE.P.DR.K.QK.N.K.SGNIT | |
Retrocopy | S<IVDDIVKGTRDWKGLRIIVKLSFK<NRPRLRQCLPS<SDSII-KAFKELP*DR<K*QK<NFKLSGNIT |
Parental | FDEIVN |
FD.IVN | |
Retrocopy | FDKIVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 280 .15 RPM |
SRP017611_liver | 0 .00 RPM | 100 .66 RPM |