RetrogeneDB ID: | retro_ocun_329 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:192170914..192171272(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 72.8 % |
Parental protein coverage: | 62.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | APKIGPLGLSPK-KVGDDIAKATGDWKGLRITVKLTIQNR-QAQIEVVPSASALIIKALKEPPRDRKKQK |
A..IGPL.LSP..KV.DDIAKATGD.K.LRIT.KLT.QNR..AQI.VVPSAS..IIKALK...RD.KK.. | |
Retrocopy | ATEIGPLRLSPR>KVDDDIAKATGD*KCLRITMKLTNQNR<IAQIKVVPSASSVIIKALKKSLRDKKK*- |
Parental | NIKHSGNITFDEIVNIARQMRHR-SLARELSGTIKEIL-GTAQSVGCNVDGRHPH |
NIKHSGNITFDEIVNIA.QM.H..SLARELS.TI..IL.GT..S.GCNVDG.H.H | |
Retrocopy | NIKHSGNITFDEIVNIAQQMHHH<SLARELSRTIIKIL<GTSHSGGCNVDGCHFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 100 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 280 .15 RPM |
SRP017611_liver | 0 .00 RPM | 100 .66 RPM |