RetrogeneDB ID: | retro_ocun_1632 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018728:2249893..2250349(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000021375 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL12 | ||
Ensembl ID: | ENSOCUG00000004902 | ||
Aliases: | None | ||
Description: | ribosomal protein L12 [Source:HGNC Symbol;Acc:10302] |
Percent Identity: | 98.03 % |
Parental protein coverage: | 77.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKAT |
RCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTGG.VGATSAL.PKIGPLGLSPKKVGDDIAKAT | |
Retrocopy | RCNSLRSSRIRVHPTPGASTMPPKFDPNEIKVVYLRCTGGKVGATSALDPKIGPLGLSPKKVGDDIAKAT |
Parental | GDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS |
GDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFD.IVNIARQMRHRS | |
Retrocopy | GDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDKIVNIARQMRHRS |
Parental | LARELSGTIKEI |
LARELSGTIKEI | |
Retrocopy | LARELSGTIKEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 7 .95 RPM | 100 .44 RPM |
SRP017611_kidney | 25 .64 RPM | 280 .15 RPM |
SRP017611_liver | 9 .02 RPM | 100 .66 RPM |