Parental gene:

ENSGGOG00000025675

Aliases:None
Description:Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:G3S518]
Organism:Gorilla (Gorilla gorilla)
Coordinates:6:73286054..73290336(-)


>ENSGGOG00000025675
ATGGGAAAGGAAAAGACTCATATCAATATTGTCGTCATTGGACACGTAGATTCGGGCAAGTCCACCACTACTGGCCATCT
GATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTT
GAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAACATGATTACAGGGACATC
TCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCC
GAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGT
CCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGT
GGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAA
TGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTCAATGTCAAGAATGTGTCTGTCAAGGATGTT
CGTCGTGGCAACGTTGCTGGTGACAGCAAAAATGACCCACCAATGGAAGCAGCTGGCTTCACTGCTCAGGTGATTATCCT
GAACCATCCAGGCCAAATAAGCGCCGGCTATGCCCCTGTATTGGATTGCCACACAGCTCACATTGCATGCAAGTTTGCTG
AGCTGAAGGAAAAGATTGATCGCCGTTCTGGTAAAAAGCTGGAAGATGGCCCTAAATTCTTGAAGTCTGGTGATGCTGCC
ATTGTTGATATGGTTCCTGGCAAGCCCATGTGTGTTGAGAGCTTCTCAGACTATCCACCTTTGGGTCGCTTTGCTGTTCG
TGATATGAGACAGACAGTTGCGGTGGGTGTCATCAAAGCAGTGGACAAGAAGGCTGCTGGAGCTGGCAAGGTCACCAAGT
CTGCCCAGAAAGCTCAGAAGGCTAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 813 .64 RPM
SRP007412_cerebellum 767 .71 RPM
SRP007412_heart 312 .04 RPM
SRP007412_kidney 4298 .85 RPM
SRP007412_liver 2725 .93 RPM
SRP007412_testis 1470 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013249 possible_ortholog 1 retrogene
retro_cfam_1007,
Dipodomys ordii ENSDORG00000009629 possible_ortholog 1 retrogene
retro_dord_509,
Equus caballus ENSECAG00000022260 possible_ortholog 1 retrogene
retro_ecab_802,
Erinaceus europaeus ENSEEUG00000000342 possible_ortholog 3 retrogenes
retro_eeur_407, retro_eeur_492, retro_eeur_625,
Echinops telfairi ENSETEG00000004236 ortholog_one2one 14 retrogenes
retro_etel_1189, retro_etel_1248, retro_etel_1260, retro_etel_1429, retro_etel_1436, retro_etel_1472, retro_etel_1578, retro_etel_1602, retro_etel_1682, retro_etel_1808, retro_etel_2135, retro_etel_366, retro_etel_411, retro_etel_830,
Loxodonta africana ENSLAFG00000028081 possible_ortholog 1 retrogene
retro_lafr_651,
Microcebus murinus ENSMICG00000015319 ortholog_one2one 21 retrogenes
retro_mmur_1027, retro_mmur_1116, retro_mmur_1145, retro_mmur_1182, retro_mmur_1190, retro_mmur_12, retro_mmur_1282, retro_mmur_1316, retro_mmur_1339, retro_mmur_1343, retro_mmur_1350, retro_mmur_1568, retro_mmur_171, retro_mmur_26, retro_mmur_273, retro_mmur_49, retro_mmur_682, retro_mmur_729, retro_mmur_825, retro_mmur_877, retro_mmur_9,
Monodelphis domestica ENSMODG00000018533 possible_ortholog 4 retrogenes
retro_mdom_1053, retro_mdom_1146, retro_mdom_311, retro_mdom_792,
Mus musculus ENSMUSG00000037742 possible_ortholog 15 retrogenes
retro_mmus_1349, retro_mmus_1518, retro_mmus_1667, retro_mmus_1783, retro_mmus_1816, retro_mmus_1849, retro_mmus_1850, retro_mmus_1864, retro_mmus_1909, retro_mmus_2363, retro_mmus_2583, retro_mmus_2902, retro_mmus_3249, retro_mmus_480, retro_mmus_483,
Pongo abelii ENSPPYG00000016777 ortholog_one2one 1 retrogene
retro_pabe_12,
Ictidomys tridecemlineatus ENSSTOG00000007687 possible_ortholog 4 retrogenes
retro_itri_1509, retro_itri_1740, retro_itri_1816, retro_itri_195,
Drosophila melanogaster FBgn0000557 ortholog_many2many 1 retrogene
retro_dmel_9,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_20 95.89 100.00
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2. retro_ggor_322 84.70 100.00
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3. retro_ggor_375 70.74 74.89
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4. retro_ggor_790 85.58 91.34
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5. retro_ggor_860 87.26 79.65
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6. retro_ggor_919 84.03 61.90
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7. retro_ggor_978 84.03 61.90
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8. retro_ggor_1193 86.12 52.81
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9. retro_ggor_1258 82.62 60.82
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10. retro_ggor_1305 91.79 100.00
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11. retro_ggor_1444 85.25 80.09
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12. retro_ggor_1529 68.42 69.48
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13. retro_ggor_2006 87.74 100.00
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14. retro_ggor_2021 64.84 54.55
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15. retro_ggor_2056 93.91 99.57
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16. retro_ggor_2066 87.74 100.00
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17. retro_ggor_2205 72.40 66.45
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18. retro_ggor_2526 78.68 82.03
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19. retro_ggor_2637 86.42 100.00
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20. retro_ggor_2826 99.68 67.10
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Download FASTA sequences of all ENSGGOG00000025675 retrocopies