RetrogeneDB ID:

retro_ggor_2826

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:9:116622490..116623420(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSGGOG00000025675
Aliases:None
Description:Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:G3S518]


Retrocopy-Parental alignment summary:






>retro_ggor_2826
ATGGGAAAGGAAAAGACTCATATCAATATTGTCGTCATTGGACACGTAGATTTGGGCAAGTCCACCACTACTGGCCATCT
GATCTATAAATGCGGTGGCATCGACAAAAGAACCATTGAAAAATTTGAGAAGGAGGCTGCTGAGATGGGAAAGGGCTCCT
TCAAGTATGCCTGGGTCTTGGATAAACTGAAAGCTGAGCGTGAACGTGGTATCACCATTGATATCTCCTTGTGGAAATTT
GAGACCAGCAAGTACTATGTGACTATCATTGATGCCCCAGGACACAGAGACTTCATCAAAAACATGATTACAGGGACATC
TCAGGCTGACTGTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTTGAAGCTGGTATCTCCAAGAATGGGCAGACCC
GAGAGCATGCCCTTCTGGCTTACACACTGGGTGTGAAACAACTAATTGTCGGTGTTAACAAAATGGATTCCACTGAGCCA
CCCTACAGCCAGAAGAGATATGAGGAAATTGTTAAGGAAGTCAGCACTTACATTAAGAAAATTGGCTACAACCCCGACAC
AGTAGCATTTGTGCCAATTTCTGGTTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAACATGCCTTGGTTCAAGGGAT
GGAAAGTCACCCGTAAGGATGGCAATGCCAGTGGAACCACGCTGCTTGAGGCTCTGGACTGCATCCTACCACCAACTCGT
CCAACTGACAAGCCCTTGCGCCTGCCTCTCCAGGATGTCTACAAAATTGGTGGTATTGGTACTGTTCCTGTTGGCCGAGT
GGAGACTGGTGTTCTCAAACCCGGTATGGTGGTCACCTTTGCTCCAGTCAACGTTACAACGGAAGTAAAATCTGTCGAAA
TGCACCATGAAGCTTTGAGTGAAGCTCTTCCTGGGGACAATGTGGGCTTC

ORF - retro_ggor_2826 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.68 %
Parental protein coverage: 67.1 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
MGKEKTHINIVVIGHVD.GKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
RetrocopyMGKEKTHINIVVIGHVDLGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG
ParentalITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
RetrocopyITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA
ParentalYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
RetrocopyYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW
ParentalFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
RetrocopyFKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF
ParentalAPVNVTTEVKSVEMHHEALSEALPGDNVGF
APVNVTTEVKSVEMHHEALSEALPGDNVGF
RetrocopyAPVNVTTEVKSVEMHHEALSEALPGDNVGF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 28 .87 RPM 813 .64 RPM
SRP007412_cerebellum 27 .50 RPM 767 .71 RPM
SRP007412_heart 8 .88 RPM 312 .04 RPM
SRP007412_kidney 131 .34 RPM 4298 .85 RPM
SRP007412_liver 82 .14 RPM 2725 .93 RPM
SRP007412_testis 44 .34 RPM 1470 .18 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2826 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2826 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_4220

Parental genes homology:
Parental genes homology involve 13 parental genes, and 87 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000132491 retrocopy
Dipodomys ordii ENSDORG000000096291 retrocopy
Equus caballus ENSECAG000000222601 retrocopy
Erinaceus europaeus ENSEEUG000000003423 retrocopies
Echinops telfairi ENSETEG0000000423614 retrocopies
Gorilla gorilla ENSGGOG00000025675 20 retrocopies
Loxodonta africana ENSLAFG000000280811 retrocopy
Microcebus murinus ENSMICG0000001531921 retrocopies
Monodelphis domestica ENSMODG000000185334 retrocopies
Mus musculus ENSMUSG0000003774215 retrocopies
Pongo abelii ENSPPYG000000167771 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000076874 retrocopies
Drosophila melanogaster FBgn00005571 retrocopy



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