RetrogeneDB ID: | retro_ggor_2826 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:116622490..116623420(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSGGOG00000025675 | ||
Aliases: | None | ||
Description: | Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:G3S518] |
Percent Identity: | 99.68 % |
Parental protein coverage: | 67.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
MGKEKTHINIVVIGHVD.GKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG | |
Retrocopy | MGKEKTHINIVVIGHVDLGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERG |
Parental | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA |
ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA | |
Retrocopy | ITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLA |
Parental | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW |
YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW | |
Retrocopy | YTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPW |
Parental | FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF |
FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF | |
Retrocopy | FKGWKVTRKDGNASGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF |
Parental | APVNVTTEVKSVEMHHEALSEALPGDNVGF |
APVNVTTEVKSVEMHHEALSEALPGDNVGF | |
Retrocopy | APVNVTTEVKSVEMHHEALSEALPGDNVGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 28 .87 RPM | 813 .64 RPM |
SRP007412_cerebellum | 27 .50 RPM | 767 .71 RPM |
SRP007412_heart | 8 .88 RPM | 312 .04 RPM |
SRP007412_kidney | 131 .34 RPM | 4298 .85 RPM |
SRP007412_liver | 82 .14 RPM | 2725 .93 RPM |
SRP007412_testis | 44 .34 RPM | 1470 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4220 |