Parental gene:

ARPP19, ENSOCUG00000015489

Aliases:None
Description:cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:17:20017990..20033130(+)


>ENSOCUG00000015489
ATGTCCGCGGAAGTCCCCGAGACAGCCTCCGCGGAGGAGCAGAAGGAAATGGAAGATAAAGTGACTAGTCCAGAGAAAGC
TGAAGAAGCAAAATTAAAAGCAAGGTATCCTCATCTGGGACAAAAGCCCGGAGGTTCAGATTTCTTAAGGAAACGATTGC
AGAAAGGGCAAAAATACTTTGATTCTGGGGATTACAACATGGCAAAAGCAAAAATGAAAAACAAGCAACTTCCTACTGCA
GCCCCGGATAAAACGGAGGTCACTGGTGACCACATTCCCACTCCACAGGACCTTCCTCAACGGAAGCCATCCCTTGTTGC
TAGCAAGCTGGCTGGCTGA

Library Parental gene expression (RPM)
SRP017611_brain 56 .68 RPM
SRP017611_kidney 18 .45 RPM
SRP017611_liver 5 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011022 ortholog_one2one 5 retrogenes
retro_btau_1259, retro_btau_1821, retro_btau_1845, retro_btau_952, retro_btau_981,
Canis familiaris ENSCAFG00000032515 ortholog_one2one 2 retrogenes
retro_cfam_1375, retro_cfam_1402,
Cavia porcellus ENSCPOG00000011228 ortholog_one2one 1 retrogene
retro_cpor_1148,
Dasypus novemcinctus ENSDNOG00000004474 ortholog_one2one 9 retrogenes
retro_dnov_1086, retro_dnov_1576, retro_dnov_1960, retro_dnov_2150, retro_dnov_2427, retro_dnov_557, retro_dnov_616, retro_dnov_644, retro_dnov_662,
Dipodomys ordii ENSDORG00000011321 possible_ortholog 2 retrogenes
retro_dord_194, retro_dord_33,
Echinops telfairi ENSETEG00000015550 ortholog_one2one 1 retrogene
retro_etel_585,
Gorilla gorilla ENSGGOG00000025250 possible_ortholog 1 retrogene
retro_ggor_198,
Nomascus leucogenys ENSNLEG00000006551 ortholog_one2one 2 retrogenes
retro_nleu_2533, retro_nleu_2884,
Oryctolagus cuniculus ENSOCUG00000003267 within_species_paralog 3 retrogenes
retro_ocun_296, retro_ocun_396, retro_ocun_722,
Otolemur garnettii ENSOGAG00000013865 possible_ortholog 1 retrogene
retro_ogar_591,
Pongo abelii ENSPPYG00000006487 possible_ortholog 2 retrogenes
retro_pabe_120, retro_pabe_1923,
Sus scrofa ENSSSCG00000004618 ortholog_one2one 1 retrogene
retro_sscr_603,
Tursiops truncatus ENSTTRG00000004804 ortholog_one2one 1 retrogene
retro_ttru_172,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_310 81.33 65.18
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2. retro_ocun_473 82.61 100.00
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3. retro_ocun_479 82.86 62.50
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4. retro_ocun_698 77.46 62.50
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5. retro_ocun_1182 81.74 100.00
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6. retro_ocun_1297 84.82 100.00
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7. retro_ocun_1398 92.42 58.93
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8. retro_ocun_1573 72.81 100.00
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9. retro_ocun_1731 94.55 98.21
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10. retro_ocun_1768 97.32 100.00
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Download FASTA sequences of all ENSOCUG00000015489 retrocopies