RetrogeneDB ID: | retro_ocun_1573 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018701:6276475..6276810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPP19 | ||
Ensembl ID: | ENSOCUG00000015489 | ||
Aliases: | None | ||
Description: | cAMP-regulated phosphoprotein, 19kDa [Source:HGNC Symbol;Acc:16967] |
Percent Identity: | 72.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSAEVPETASAEEQKEMEDKVTSPEKAEEAKLKARYPHLGQKPGGSD-FLR-KRLQKGQKYFDSGDYNMA |
.S.EVPE....E..KEMEDKVTSP.KA.EAKLKARYPHLGQKPGGSD.FL..K.L.KGQKYFDSGDY..A | |
Retrocopy | LSQEVPESPG-EKLKEMEDKVTSPQKAAEAKLKARYPHLGQKPGGSD<FLKEKQLHKGQKYFDSGDYHVA |
Parental | KAKMKNKQLPTAAPDKTEVTGDHIPTPQDLPQRKPSLVASKLAG |
K.KMK..Q.PTAAPD...V.GD.IPT..DL.QR.P.LVASKLAG | |
Retrocopy | KTKMKKEQRPTAAPDQKVVAGDRIPTARDLAQRAPCLVASKLAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .68 RPM |
SRP017611_kidney | 0 .00 RPM | 18 .45 RPM |
SRP017611_liver | 0 .00 RPM | 5 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011022 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032515 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011228 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004474 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000011321 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015550 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025250 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006551 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000003267 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015489 | 10 retrocopies |
retro_ocun_1182, retro_ocun_1297, retro_ocun_1398, retro_ocun_1573 , retro_ocun_1731, retro_ocun_1768, retro_ocun_310, retro_ocun_473, retro_ocun_479, retro_ocun_698,
|
Otolemur garnettii | ENSOGAG00000013865 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006487 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004618 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004804 | 1 retrocopy |