RetrogeneDB ID: | retro_cpor_1148 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_5:7042107..7042435(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARPP19 | ||
Ensembl ID: | ENSCPOG00000011228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSAEVPEAASAEEQKEMEDKVTSPEKAEEAKLKARYPHLGQKPGGSDFLRKRL-QKGQ-KYFDSGDYNMA |
MSAEVP......E.K.M.....SP.KAEEAKL.A.YPHLGQKPG.S..LRK.L..KGQ.KYF.SG.YN.. | |
Retrocopy | MSAEVPKVGLVKELKQMSNH--SPMKAEEAKLRAKYPHLGQKPGRSNCLRKSL<EKGQ<KYFNSGNYNVI |
Parental | KAKMKNKQLPTATPDKTEVTGDHIPTPQDLPQRKPSLVTSKLAG |
KAKMKNKQLPT..PD..EVTG.HIPTPQDLPQ.K.SLV.SKLAG | |
Retrocopy | KAKMKNKQLPTVIPDNNEVTGGHIPTPQDLPQ*KTSLVMSKLAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 118 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .80 RPM |
SRP017611_liver | 0 .00 RPM | 38 .91 RPM |
SRP040447_lung | 0 .00 RPM | 21 .49 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 47 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011022 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000032515 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011228 | 1 retrocopy |
retro_cpor_1148 ,
|
Dasypus novemcinctus | ENSDNOG00000004474 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000011321 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015550 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000025250 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006551 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015489 | 10 retrocopies | |
Otolemur garnettii | ENSOGAG00000013865 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006487 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004618 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004804 | 1 retrocopy |