Parental gene: | ACTC1, ENSPPYG00000006318 |
| Aliases: | None |
| Description: | actin, alpha, cardiac muscle 1 [Source:HGNC Symbol;Acc:143] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 15:30962519..30967432(-) |
>ENSPPYG00000006318
ATGTGTGACGACGAGGAGACCACCGCCCTGGTGTGCGACAACGGCTCTGGGCTGGTGAAGGCCGGCTTTGCGGGCGATGA
CGCGCCCCGCGCTGTCTTCCCGTCCATCGTGGGCCGCCCGCGGCACCAGGGAGTTATGGTGGGTATGGGTCAGAAGGACT
CCTACGTAGGTGATGAAGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGTATCATCACCAAC
TGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTGGCTCCCGAGGAGCACCCCACGCTGCT
CACAGAGGCCCCGCTGAACCCCAAGGCCAACCGGGAGAAGATGACTCAGATCATGTTTGAGACCTTCAATGTCCCTGCCA
TGTATGTGGCCATCCAGGCAGTGCTATCCCTGTATGCTTCTGGCCGTACCACAGGCATTGTTCTGGACTCTGGGGATGGT
GTAACTCACAATGTCCCCATCTATGAGGGCTACGCTTTGCCCCATGCCATCATGCGTCTGGATCTGGCTGGTAGGGACCT
CACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTACTCCTTTGTCACCACTGCTGAACGTGAAATTGTCCGTGACA
TTAAAGAGAAGCTGTGCTATGTCGCCCTGGATTTTGAGAATGAGATGGCCACAGCTGCCTCTTCCTCCTCCCTGGAGAAG
AGCTATGAACTGCCTGATGGCCAAGTCATCACTATTGGCAATGAGCGCTTCCGCTGTCCCGAGACGCTCTTCCAGCCCTC
CTTCATTGGTATGGAATCTGCTGGCATCCATGAAACAACTTACAATAGCATCATGAAGTGTGACATTGATATCCGCAAGG
ACCTGTATGCCAACAATGTCTTATCTGGAGGCACCACTATGTACCCTGGTATTGCTGATCGTATGCAGAAGGAAATCACT
GCTCTGGCTCCTAGCACCATGAAGATTAAGATTATTGCTCCCCCTGAGCGTAAATACTCTGTCTGGATTGGGGGCTCCAT
CCTGGCCTCTCTGTCCACCTTTCAGCAAATGTGGATTAGCAAGCAAGAGTACGATGAGGCAGGCCCATCCATTGTCCACC
GCAAATGCTTCTAA
ATGTGTGACGACGAGGAGACCACCGCCCTGGTGTGCGACAACGGCTCTGGGCTGGTGAAGGCCGGCTTTGCGGGCGATGA
CGCGCCCCGCGCTGTCTTCCCGTCCATCGTGGGCCGCCCGCGGCACCAGGGAGTTATGGTGGGTATGGGTCAGAAGGACT
CCTACGTAGGTGATGAAGCCCAGAGCAAGAGAGGCATCCTGACCCTGAAGTACCCCATCGAGCATGGTATCATCACCAAC
TGGGATGACATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGTGTGGCTCCCGAGGAGCACCCCACGCTGCT
CACAGAGGCCCCGCTGAACCCCAAGGCCAACCGGGAGAAGATGACTCAGATCATGTTTGAGACCTTCAATGTCCCTGCCA
TGTATGTGGCCATCCAGGCAGTGCTATCCCTGTATGCTTCTGGCCGTACCACAGGCATTGTTCTGGACTCTGGGGATGGT
GTAACTCACAATGTCCCCATCTATGAGGGCTACGCTTTGCCCCATGCCATCATGCGTCTGGATCTGGCTGGTAGGGACCT
CACTGACTACCTCATGAAGATCCTCACTGAGCGTGGCTACTCCTTTGTCACCACTGCTGAACGTGAAATTGTCCGTGACA
TTAAAGAGAAGCTGTGCTATGTCGCCCTGGATTTTGAGAATGAGATGGCCACAGCTGCCTCTTCCTCCTCCCTGGAGAAG
AGCTATGAACTGCCTGATGGCCAAGTCATCACTATTGGCAATGAGCGCTTCCGCTGTCCCGAGACGCTCTTCCAGCCCTC
CTTCATTGGTATGGAATCTGCTGGCATCCATGAAACAACTTACAATAGCATCATGAAGTGTGACATTGATATCCGCAAGG
ACCTGTATGCCAACAATGTCTTATCTGGAGGCACCACTATGTACCCTGGTATTGCTGATCGTATGCAGAAGGAAATCACT
GCTCTGGCTCCTAGCACCATGAAGATTAAGATTATTGCTCCCCCTGAGCGTAAATACTCTGTCTGGATTGGGGGCTCCAT
CCTGGCCTCTCTGTCCACCTTTCAGCAAATGTGGATTAGCAAGCAAGAGTACGATGAGGCAGGCCCATCCATTGTCCACC
GCAAATGCTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 17 .31 RPM |
| SRP007412_cerebellum | 1 .46 RPM |
| SRP007412_heart | 3683 .43 RPM |
| SRP007412_kidney | 0 .56 RPM |
| SRP007412_liver | 0 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Latimeria chalumnae | ENSLACG00000011801 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000004074 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002459 | other_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000002605 | other_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008735 | other_paralog | 11 retrogenes | |
| Pongo abelii | ENSPPYG00000017336 | other_paralog | 23 retrogenes |
retro_pabe_1281, retro_pabe_1292, retro_pabe_1575, retro_pabe_1610, retro_pabe_1772, retro_pabe_1816, retro_pabe_1911, retro_pabe_2042, retro_pabe_2168, retro_pabe_2175, retro_pabe_2188, retro_pabe_227, retro_pabe_2754, retro_pabe_2811, retro_pabe_2824, retro_pabe_2862, retro_pabe_2978, retro_pabe_309, retro_pabe_3563, retro_pabe_3567, retro_pabe_3746, retro_pabe_745, retro_pabe_86,
|
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1317 | 61.90 | 70.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000006318 retrocopies