RetrogeneDB ID: | retro_pabe_2175 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2b_random:5803944..5805068(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 86.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ-KDSYVGDEAQSKRGILTLKY |
M.DD.A.L..DNGSGMCKAGFAGD.APRA.FPSIVGRPR.QG.M.GMGQ.KDSYVG.EAQS.RGILTLKY | |
Retrocopy | MGDDTAVLIIDNGSGMCKAGFAGDNAPRAIFPSIVGRPRYQGMMGGMGQ<KDSYVGIEAQSRRGILTLKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
P.EH.I.TNW..MEKIW.H.FYNELRVAPEEHP.LLTEAPLNPKAN.EKMTQIMFETFNTPAMYVAIQAV | |
Retrocopy | PMEHSIITNWENMEKIWRHSFYNELRVAPEEHPMLLTEAPLNPKANHEKMTQIMFETFNTPAMYVAIQAV |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSLY..GRTTGI..DSGDGVTHTVP.YEG.A.P.AIL.L.LAGRDLTDYL.KILTERGY.FTTTAE.EIV | |
Retrocopy | LSLYTPGRTTGIMTDSGDGVTHTVPTYEGNAFPYAILHLELAGRDLTDYLVKILTERGYRFTTTAEQEIV |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF |
.DIKEK.CYVALDFE..MA.AASSSSLEKSYELPDGQVITIGN..FRCPEALFQPSFLGMESCG.HETTF | |
Retrocopy | CDIKEKPCYVALDFEW*MAMAASSSSLEKSYELPDGQVITIGN*WFRCPEALFQPSFLGMESCGVHETTF |
Parental | NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
NSIMKCD.DI.KDLYANTVLSGGTTMYPGIADRMQKEITAL.PSTMKIKIIAP.ERKYSVW.GGSILASL | |
Retrocopy | NSIMKCDMDIHKDLYANTVLSGGTTMYPGIADRMQKEITALVPSTMKIKIIAPLERKYSVWVGGSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
STFQQMWISKQ.YDESGPSIVH.KCF | |
Retrocopy | STFQQMWISKQGYDESGPSIVHCKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .00 RPM | 1654 .82 RPM |