RetrogeneDB ID: | retro_pabe_86 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:58805685..58806816(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000015482 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 92.78 % |
Parental protein coverage: | 99.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DD...ALVVDNGSGMCKAGF.GDDAPRAVFPSI.GRPRHQGVMVGMGQKD.YVGDEAQSKRG.LTLKYPI | |
Retrocopy | DDELSALVVDNGSGMCKAGFGGDDAPRAVFPSIIGRPRHQGVMVGMGQKDCYVGDEAQSKRGVLTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS |
EHG.VTNWDDMEKIW.HTFYNELRVAP.EHP.LLTEAPLNPK.NREKMTQIMFE.FNTPAMYVAIQAVLS | |
Retrocopy | EHGVVTNWDDMEKIWYHTFYNELRVAPDEHPILLTEAPLNPKINREKMTQIMFEAFNTPAMYVAIQAVLS |
Parental | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD |
LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY.FTTTAEREIVRD | |
Retrocopy | LYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYNFTTTAEREIVRD |
Parental | IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNS |
.KEKLCYVALDFEQEM..AA.SSSLE.SYELPDGQVITIGNERFRCPEA.FQPSFLG.ES.GIHETTFNS | |
Retrocopy | VKEKLCYVALDFEQEMIRAAASSSLERSYELPDGQVITIGNERFRCPEAIFQPSFLGVESSGIHETTFNS |
Parental | IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST |
IMKCDVDIRKDLYANTVLSGG.TMYPGIADRMQKEI..LAPSTMKIKIIAPPERKYSVWIGGSILASLST | |
Retrocopy | IMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEIITLAPSTMKIKIIAPPERKYSVWIGGSILASLST |
Parental | FQQMWISKQEYDESGPSIVHRKCF |
FQQMWISKQEYDE.GP.IVHRKCF | |
Retrocopy | FQQMWISKQEYDEAGPPIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .00 RPM | 1654 .82 RPM |