RetrogeneDB ID: | retro_pabe_3567 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | Un:7710407..7711532(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 90.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP |
MDDD.A.LV.DNGSGMCKAGFAGDDAPRAVF.SIVGRPRHQG.M.GM.QK.SYVG.E.QSKRGILTLKYP | |
Retrocopy | MDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFSSIVGRPRHQGMMGGMRQKESYVGNETQSKRGILTLKYP |
Parental | IEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL |
.EHGI.TNWDDMEKIWHHTFYNELRVAPEEHP.LLTEAPL.PKANREKMTQI.FETFNTPAMYVAIQAVL | |
Retrocopy | MEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLIPKANREKMTQIRFETFNTPAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR |
SLY.SGRTTGIVMDSGDGVTHTVPIYE..ALPHA.L.LDLAGR.LTDYLMKILTERGY.FTTTAEREIVR | |
Retrocopy | SLYTSGRTTGIVMDSGDGVTHTVPIYEENALPHATLHLDLAGRELTDYLMKILTERGYRFTTTAEREIVR |
Parental | DIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFN |
DIKEKLCYVALDFEQEMATAASSSSLEKSY.LPDGQVITIGNER.RCPE.LFQP.FLGMESCGIHETTFN | |
Retrocopy | DIKEKLCYVALDFEQEMATAASSSSLEKSYKLPDGQVITIGNERLRCPEVLFQPCFLGMESCGIHETTFN |
Parental | SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS |
SIMK.DVDIRKDLY.NTVLSGGTTMYPGI..RMQKEI.ALAPSTMKIKI.APP.RKYSVW.GGSILASLS | |
Retrocopy | SIMKSDVDIRKDLYTNTVLSGGTTMYPGITHRMQKEIAALAPSTMKIKIVAPPKRKYSVWVGGSILASLS |
Parental | TFQQMWISKQEYDESGPSIVHRKCF |
TFQQMWISKQEYDESGPSIVHRKCF | |
Retrocopy | TFQQMWISKQEYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .73 RPM | 578 .33 RPM |
SRP007412_heart | 0 .09 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .13 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .12 RPM | 1654 .82 RPM |