RetrogeneDB ID: | retro_pabe_2811 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5_random:9721437..9722521(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 88.59 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | VDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW |
VD.GSGMCKAGFAGDD.P.A.FPS.VGRPRHQGVMVGM..KDSY.G.EAQSKRGILTLKYPIEHGIVTNW | |
Retrocopy | VDKGSGMCKAGFAGDDDPWALFPSTVGRPRHQGVMVGMDRKDSYAGNEAQSKRGILTLKYPIEHGIVTNW |
Parental | DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT |
.DMEKIWHHTF.NEL.VAP.E.PVLL.EAPLNPKANREKMT.I.FETFNTPAMYVAIQAVLSLYASG.T. | |
Retrocopy | VDMEKIWHHTFCNELHVAPKEQPVLLSEAPLNPKANREKMT*IIFETFNTPAMYVAIQAVLSLYASGCTI |
Parental | GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYV |
GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKIL.ERGYSFTT.A..EI.RDIKEKLCYV | |
Retrocopy | GIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILSERGYSFTTKAQQEIMRDIKEKLCYV |
Parental | ALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDI |
ALDFEQEMA.AASSSSLEKS.EL.....ITIGNERFR.PEALFQPS.LGMESCGIHETTFN.IMKCD.DI | |
Retrocopy | ALDFEQEMARAASSSSLEKS*EL----FITIGNERFRSPEALFQPSLLGMESCGIHETTFNCIMKCDADI |
Parental | RKDLYANTVLSGGTTMYPGIADRMQKEI-TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS |
.KDL.ANTVLSGGTTMYPGIADRMQKEI.TALA.STMKIKIIAPPER.YSVWI.GSILASLSTFQQMWIS | |
Retrocopy | LKDL*ANTVLSGGTTMYPGIADRMQKEI<TALALSTMKIKIIAPPEREYSVWIRGSILASLSTFQQMWIS |
Parental | KQ-EYDESGPSIVHRKCF |
KQ.EYDESGPSIVHRKCF | |
Retrocopy | KQ<EYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .00 RPM | 1654 .82 RPM |