RetrogeneDB ID: | retro_pabe_3563 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | Un:4737803..4738927(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MDDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQK-DSYVGDEAQSKRGILTLKY |
M.DD.A.L..DNGSGMCKA.FAGD..P.AVFPSIVG.PR.QG.M.GMGQK.DSYVG..AQSKRGILTLKY | |
Retrocopy | MGDDTAVLLIDNGSGMCKASFAGDNVPWAVFPSIVGHPRYQGMMGGMGQK<DSYVGIKAQSKRGILTLKY |
Parental | PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV |
P.EHGI.TNWDDMEKIWHH.FYNELRVAPEEHP.LLTEA.LNPKAN.EK.TQIMFETFNTPAMYVAIQAV | |
Retrocopy | PMEHGIITNWDDMEKIWHHSFYNELRVAPEEHPMLLTEAHLNPKANHEKTTQIMFETFNTPAMYVAIQAV |
Parental | LSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV |
LSLY..G.TT.IV.DSGDGVTHTVPIYEG.A.PHAIL.L.LAGRDLTDYL.KILTE.GY.FTTTAEREIV | |
Retrocopy | LSLYTPGHTTSIVTDSGDGVTHTVPIYEGNAFPHAILCLELAGRDLTDYLVKILTEHGYRFTTTAEREIV |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTF |
.DIKEKLCYVALDFEQEMA.AASSSSLEKSYELP.GQVITIGNERF.CPEALFQPSFLGMESCGIHETTF | |
Retrocopy | CDIKEKLCYVALDFEQEMAMAASSSSLEKSYELPNGQVITIGNERFHCPEALFQPSFLGMESCGIHETTF |
Parental | NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL |
NSIMKCD.DIRKDLYANTVLSGGTTMYPGIADRMQKEITAL.PS.MKIKIIAP.ERKYS.W.GGSILASL | |
Retrocopy | NSIMKCDMDIRKDLYANTVLSGGTTMYPGIADRMQKEITALVPSMMKIKIIAPLERKYSMWVGGSILASL |
Parental | STFQQMWISKQEYDESGPSIVHRKCF |
STFQQMWIS.Q.YDESGPSIVHRKCF | |
Retrocopy | STFQQMWIS*QGYDESGPSIVHRKCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .00 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .03 RPM | 1654 .82 RPM |