RetrogeneDB ID: | retro_pabe_745 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:1643261..1644027(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ACTB | ||
Ensembl ID: | ENSPPYG00000017336 | ||
Aliases: | None | ||
Description: | Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0] |
Percent Identity: | 71.37 % |
Parental protein coverage: | 69.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPI |
DD.IA.LV.DN.SGMCK...AGDDAPRAVFPSIVG.PRHQGV.VGM.QKDSYV.DEAQSKRGILTLKYPI | |
Retrocopy | DDNIALLVIDNTSGMCKVSLAGDDAPRAVFPSIVGCPRHQGVTVGMSQKDSYVVDEAQSKRGILTLKYPI |
Parental | EHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL-NPKANREKMTQIMFETFNTPAMYVAIQAVL |
EHGI.T..DDMEKIWHH.FYNELR....EHPVLLTEA....PKANR.KMTQIMFETFNT.AMYVAIQAVL | |
Retrocopy | EHGIITTLDDMEKIWHHIFYNELR----EHPVLLTEASR<SPKANRKKMTQIMFETFNTSAMYVAIQAVL |
Parental | SLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI-LTERGYSFTTTAEREIV |
S.Y..G.TTGI...S..GVT.TV.IYEGY.LPHAIL.LD.AGRD.TDYL.KI.LTERGYSFTTTAER.I. | |
Retrocopy | SMYTPGHTTGIMTNSSNGVTRTVSIYEGYTLPHAILCLDPAGRDQTDYLTKI<LTERGYSFTTTAERVIM |
Parental | RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAL |
.DIKEKLCYVALDF....ATA..................T......RCP..L | |
Retrocopy | CDIKEKLCYVALDFKR*VATATTWRRATSCLTARSSPLATSSSTAPRCPSSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1655 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 578 .33 RPM |
SRP007412_heart | 0 .06 RPM | 386 .86 RPM |
SRP007412_kidney | 0 .00 RPM | 1247 .35 RPM |
SRP007412_liver | 0 .00 RPM | 1654 .82 RPM |