Parental gene:

ACTB, ENSPPYG00000017336

Aliases:None
Description:Actin, cytoplasmic 1 Actin, cytoplasmic 1, N-terminally processed [Source:UniProtKB/Swiss-Prot;Acc:Q5R6G0]
Organism:Orangutan (Pongo abelii)
Coordinates:7:5557506..5561519(-)


>ENSPPYG00000017336
ATGGATGATGATATCGCCGCGCTCGTCGTCGACAACGGCTCCGGCATGTGCAAGGCCGGCTTCGCGGGCGACGATGCCCC
CCGGGCCGTCTTCCCCTCCATCGTGGGGCGCCCCAGGCACCAGGGCGTGATGGTGGGCATGGGTCAGAAGGATTCCTATG
TGGGCGACGAAGCCCAGAGCAAGAGAGGCATCCTCACCCTGAAGTACCCCATCGAGCACGGCATCGTCACCAACTGGGAT
GACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCTGACCGA
GGCCCCCCTGAACCCCAAGGCCAACCGCGAGAAGATGACCCAGATCATGTTTGAAACCTTCAACACCCCAGCCATGTACG
TGGCTATCCAGGCTGTGCTGTCCCTGTACGCCTCTGGCCGTACCACTGGCATCGTGATGGACTCCGGTGACGGGGTCACC
CACACTGTGCCCATCTACGAGGGGTATGCCCTCCCCCATGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACTGA
CTACCTCATGAAGATCCTCACCGAGCGCGGCTACAGCTTCACCACCACGGCCGAGCGGGAAATCGTGCGTGACATTAAGG
AGAAGCTGTGCTACGTCGCCTTGGACTTCGAGCAGGAGATGGCCACGGCTGCTTCCAGCTCCTCCCTGGAGAAGAGCTAC
GAGCTGCCCGATGGCCAGGTCATCACCATTGGCAACGAGCGGTTCCGCTGCCCCGAGGCGCTCTTCCAGCCTTCCTTCCT
TGGCATGGAGTCCTGTGGCATTCACGAAACTACCTTCAACTCCATCATGAAGTGTGACGTGGACATCCGCAAAGACCTGT
ACGCCAACACAGTGCTGTCTGGCGGCACCACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCACCGCCCTG
GCACCCAGCACCATGAAGATCAAGATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCATCCTGGC
CTCGCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTATGACGAGTCCGGCCCCTCCATCGTCCACCGCAAAT
GCTTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1655 .73 RPM
SRP007412_cerebellum 578 .33 RPM
SRP007412_heart 386 .86 RPM
SRP007412_kidney 1247 .35 RPM
SRP007412_liver 1654 .82 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006601 ortholog_one2one 1 retrogene
retro_amel_11,
Cavia porcellus ENSCPOG00000013467 ortholog_one2one 1 retrogene
retro_cpor_60,
Homo sapiens ENSG00000075624 ortholog_one2one 6 retrogenes
retro_hsap_1563, retro_hsap_1894, retro_hsap_3386, retro_hsap_38, retro_hsap_4204, retro_hsap_518,
Gallus gallus ENSGALG00000009621 ortholog_one2one 1 retrogene
retro_ggal_4,
Gorilla gorilla ENSGGOG00000001133 ortholog_one2one 18 retrogenes
retro_ggor_1177, retro_ggor_1188, retro_ggor_1211, retro_ggor_1266, retro_ggor_1297, retro_ggor_1332, retro_ggor_1387, retro_ggor_1622, retro_ggor_1825, retro_ggor_1890, retro_ggor_2292, retro_ggor_2774, retro_ggor_2817, retro_ggor_3002, retro_ggor_352, retro_ggor_405, retro_ggor_44, retro_ggor_477,
Loxodonta africana ENSLAFG00000009167 possible_ortholog 1 retrogene
retro_lafr_116,
Meleagris gallopavo ENSMGAG00000003960 ortholog_one2one 2 retrogenes
retro_mgal_5, retro_mgal_6,
Macaca mulatta ENSMMUG00000011153 possible_ortholog 1 retrogene
retro_mmul_135,
Mustela putorius furo ENSMPUG00000016612 ortholog_one2one 2 retrogenes
retro_mputfur_440, retro_mputfur_461,
Mus musculus ENSMUSG00000029580 ortholog_one2one 7 retrogenes
retro_mmus_1613, retro_mmus_1677, retro_mmus_283, retro_mmus_2880, retro_mmus_3411, retro_mmus_3532, retro_mmus_761,
Ornithorhynchus anatinus ENSOANG00000007716 ortholog_one2one 2 retrogenes
retro_oana_4, retro_oana_8,
Otolemur garnettii ENSOGAG00000008348 ortholog_one2many 1 retrogene
retro_ogar_2637,
Petromyzon marinus ENSPMAG00000004161 possible_ortholog 1 retrogene
retro_pmar_4,
Pongo abelii ENSPPYG00000002459 within_species_paralog 1 retrogene
retro_pabe_3027,
Pongo abelii ENSPPYG00000002605 other_paralog 1 retrogene
retro_pabe_1930,
Pongo abelii ENSPPYG00000006318 other_paralog 1 retrogene
retro_pabe_1317,
Pongo abelii ENSPPYG00000008735 within_species_paralog 11 retrogenes
retro_pabe_1091, retro_pabe_1391, retro_pabe_1727, retro_pabe_2187, retro_pabe_2308, retro_pabe_2621, retro_pabe_2945, retro_pabe_3381, retro_pabe_3475, retro_pabe_3760, retro_pabe_600,
Rattus norvegicus ENSRNOG00000034254 ortholog_one2one 10 retrogenes
retro_rnor_1324, retro_rnor_1386, retro_rnor_1799, retro_rnor_2371, retro_rnor_2714, retro_rnor_2856, retro_rnor_2978, retro_rnor_351, retro_rnor_459, retro_rnor_935,
Sarcophilus harrisii ENSSHAG00000012694 ortholog_one2one 4 retrogenes
retro_shar_120, retro_shar_370, retro_shar_62, retro_shar_93,
Sus scrofa ENSSSCG00000007585 ortholog_one2one 1 retrogene
retro_sscr_548,
Ictidomys tridecemlineatus ENSSTOG00000006868 possible_ortholog 2 retrogenes
retro_itri_1675, retro_itri_531,
Ictidomys tridecemlineatus ENSSTOG00000014797 ortholog_one2one 3 retrogenes
retro_itri_149, retro_itri_1881, retro_itri_4,
Xenopus tropicalis ENSXETG00000025116 possible_ortholog 1 retrogene
retro_xtro_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_86 92.78 99.73
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2. retro_pabe_227 87.46 82.40
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3. retro_pabe_309 80.47 90.13
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4. retro_pabe_745 71.37 69.33
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5. retro_pabe_1281 71.97 90.67
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6. retro_pabe_1292 78.42 100.00
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7. retro_pabe_1575 83.24 100.00
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8. retro_pabe_1610 82.69 89.07
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9. retro_pabe_1772 88.75 82.40
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10. retro_pabe_1816 71.43 51.73
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11. retro_pabe_1911 83.49 56.53
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12. retro_pabe_2042 93.33 100.00
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13. retro_pabe_2168 89.27 100.00
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14. retro_pabe_2175 86.70 100.00
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15. retro_pabe_2188 88.33 100.00
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16. retro_pabe_2754 81.06 60.27
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17. retro_pabe_2811 88.59 97.60
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18. retro_pabe_2824 87.63 98.93
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19. retro_pabe_2862 85.31 64.80
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20. retro_pabe_2978 83.66 93.33
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21. retro_pabe_3563 87.50 100.00
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22. retro_pabe_3567 90.93 100.00
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23. retro_pabe_3746 82.05 62.13
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Download FASTA sequences of all ENSPPYG00000017336 retrocopies