Parental gene:

Tpt1, ENSRNOG00000001049

Aliases:None
Description:Translationally-controlled tumor protein [Source:UniProtKB/Swiss-Prot;Acc:P63029]
Organism:Rat (Rattus norvegicus)
Coordinates:15:61598727..61601614(+)


>ENSRNOG00000001049
ATGATCATCTACCGGGACCTCATCAGCCATGACGAGCTGTTCTCCGACATCTACAAGATCCGGGAGATCGCGGACGGGCT
GTGCCTGGAGGTGGAGGGCAAGATGGTCAGTAGAACAGAGGGTGCCATCGATGATTCACTCATTGGTGGAAATGCTTCCG
CTGAAGGTCCGGAGGGCGAAGGTACCGAAAGCACAGTAGTCACCGGTGTTGACATTGTCATGAACCATCACTTACAAGAA
ACCAGCTTCACAAAAGAGGCCTACAAAAAGTATATCAAAGACTACATGAAATCACTCAAGGGCAAACTTGAAGAACAGAA
ACCAGAAAGGGTAAAGCCTTTTATGACTGGAGCTGCAGAGCAAATTAAGCACATCCTTGCTAATTTCAATAACTACCAGT
TTTTTATTGGTGAAAACATGAATCCAGATGGCATGGTTGCTCTACTGGACTACCGTGAAGATGGTGTGACTCCATTCATG
ATTTTCTTTAAGGATGGCTTAGAGATGGAAAAATGTTAA

Library Parental gene expression (RPM)
SRP017611_brain 283 .20 RPM
SRP017611_kidney 809 .54 RPM
SRP017611_liver 707 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2many 2 retrogenes
retro_acar_156, retro_acar_58,
Cavia porcellus ENSCPOG00000009278 possible_ortholog 12 retrogenes
retro_cpor_1053, retro_cpor_1215, retro_cpor_1273, retro_cpor_206, retro_cpor_248, retro_cpor_340, retro_cpor_536, retro_cpor_583, retro_cpor_602, retro_cpor_697, retro_cpor_917, retro_cpor_968,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2many 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Dipodomys ordii ENSDORG00000008518 ortholog_one2many 2 retrogenes
retro_dord_370, retro_dord_471,
Echinops telfairi ENSETEG00000003091 ortholog_many2many 3 retrogenes
retro_etel_1337, retro_etel_1546, retro_etel_248,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2many 2 retrogenes
retro_lcha_24, retro_lcha_34,
Myotis lucifugus ENSMLUG00000017709 ortholog_one2many 1 retrogene
retro_mluc_1332,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Mus musculus ENSMUSG00000060126 ortholog_one2many 8 retrogenes
retro_mmus_1643, retro_mmus_2193, retro_mmus_2354, retro_mmus_2862, retro_mmus_3264, retro_mmus_3371, retro_mmus_3483, retro_mmus_3496,
Oryctolagus cuniculus ENSOCUG00000023692 ortholog_many2many 2 retrogenes
retro_ocun_40, retro_ocun_75,
Procavia capensis ENSPCAG00000016228 possible_ortholog 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Pteropus vampyrus ENSPVAG00000003191 ortholog_one2many 15 retrogenes
retro_pvam_1069, retro_pvam_1116, retro_pvam_1142, retro_pvam_1145, retro_pvam_1252, retro_pvam_1266, retro_pvam_1290, retro_pvam_1322, retro_pvam_1387, retro_pvam_242, retro_pvam_369, retro_pvam_547, retro_pvam_585, retro_pvam_721, retro_pvam_801,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_115 94.19 100.00
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2. retro_rnor_411 98.26 100.00
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3. retro_rnor_886 61.32 61.05
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4. retro_rnor_908 82.47 87.79
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5. retro_rnor_958 85.16 90.12
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6. retro_rnor_2464 84.04 53.49
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7. retro_rnor_2706 84.03 69.19
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Download FASTA sequences of all ENSRNOG00000001049 retrocopies