RetrogeneDB ID: | retro_cpor_206 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_10:28722658..28723124(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000022283 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSCPOG00000009278 | ||
Aliases: | None | ||
Description: | translationally-controlled tumor protein [Source:RefSeq peptide;Acc:NP_001166553] |
Percent Identity: | 71.25 % |
Parental protein coverage: | 91.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MIIYRDLIS-HDEMSDIYKIREIADGLC-EVEGKMVSRTEGNIDD-SLIGGNASAEGPEGEGTESTVITG |
MII...LI..H...S.IYK.REI.DGLC.EVEGKMV.RTEGN.D..S...GN.SAE..EG...ESTV.TG | |
Retrocopy | MIIC*SLIA<HNMLSNIYKTREIKDGLCLEVEGKMVGRTEGNTDA<SFNTGNDSAESLEGKSPESTVVTG |
Parental | VDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGAN |
VD.V.NHHLQETSFTKE.Y..YI.DYMKSIKGKLEEQR.ERVK.FMTG.AE.IKHILANF.N.QFFIGAN | |
Retrocopy | VDTVINHHLQETSFTKESYEQYIIDYMKSIKGKLEEQRLERVKLFMTGSAEHIKHILANFENSQFFIGAN |
Parental | M-NPDGMVALLDYR-EDGVT |
M..PDG.VA.LD...ED.VT | |
Retrocopy | M<DPDGIVAFLDSH>EDSVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 377 .83 RPM |
SRP017611_kidney | 0 .10 RPM | 916 .22 RPM |
SRP017611_liver | 0 .04 RPM | 886 .12 RPM |
SRP040447_lung | 0 .00 RPM | 996 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 2302 .05 RPM |