RetrogeneDB ID: | retro_cpor_536 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_181:395302..395803(-) | ||
Located in intron of: | ENSCPOG00000006217 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSCPOG00000009278 | ||
Aliases: | None | ||
Description: | translationally-controlled tumor protein [Source:RefSeq peptide;Acc:NP_001166553] |
Percent Identity: | 67.84 % |
Parental protein coverage: | 97.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MIIYRDLISHDEM-SDIYKIREIADGLC-EVEGKMVSRTEGNIDDSLIGGNASAEG-PEGEG-TESTVIT |
MI...DLIS..E...DIY.I.EI..G....VEG.MVSRTE.N.DDSLIGGNASAEG.P.G.......... | |
Retrocopy | MIVNWDLISQAEIFCDIYQIGEIVAGCT>GVEGRMVSRTESNVDDSLIGGNASAEG<PSGQR<APKALLS |
Parental | GVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE-QIKHILANFKNYQFFIG |
.V.IVMNH.LQE.SFTKE..KKYIK.YMKSIK.KLEEQRPERVKPF..G.AE..IKHI.ANFKN..FF.G | |
Retrocopy | QVFIVMNHQLQEISFTKETSKKYIKGYMKSIKSKLEEQRPERVKPFVKGVAE>KIKHIHANFKNCHFFTG |
Parental | ANMNPDGMVALLDYREDGVTPFMIFFKDGLE |
.NMNPDGMVA..DY..DGVTPF.IFFKD.LE | |
Retrocopy | VNMNPDGMVAVPDYCKDGVTPFLIFFKDDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .75 RPM | 377 .83 RPM |
SRP017611_kidney | 0 .42 RPM | 916 .22 RPM |
SRP017611_liver | 0 .70 RPM | 886 .12 RPM |
SRP040447_lung | 0 .43 RPM | 996 .93 RPM |
SRP040447_skeletal_muscle | 0 .17 RPM | 2302 .05 RPM |