RetrogeneDB ID: | retro_mmus_3371 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:98925173..98925438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tpt1 | ||
Ensembl ID: | ENSMUSG00000060126 | ||
Aliases: | None | ||
Description: | tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890] |
Percent Identity: | 83.15 % |
Parental protein coverage: | 63.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAEQIKHILANFNNYQFF-IGENMNPDGMVALLDYRE |
KEAYKK.IK.YMKSLKGKLE.QKPERVKPFM.GA.EQIKHILA..NNY.FF..GENMNPDGMV.LLDYRE | |
Retrocopy | KEAYKKHIKGYMKSLKGKLEGQKPERVKPFMAGAVEQIKHILADINNYRFF>TGENMNPDGMVTLLDYRE |
Parental | DGVTPFMIFFKDGLEMEKC |
DG.TPFMIFFK.GL..EKC | |
Retrocopy | DGMTPFMIFFKNGLDVEKC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 138 .61 RPM |
SRP007412_cerebellum | 0 .00 RPM | 86 .23 RPM |
SRP007412_heart | 0 .00 RPM | 376 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 341 .53 RPM |
SRP007412_liver | 0 .00 RPM | 283 .46 RPM |
SRP007412_testis | 0 .00 RPM | 182 .59 RPM |