RetrogeneDB ID: | retro_cpor_248 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_11:18778864..18779311(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000025269 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSCPOG00000009278 | ||
Aliases: | None | ||
Description: | translationally-controlled tumor protein [Source:RefSeq peptide;Acc:NP_001166553] |
Percent Identity: | 61.59 % |
Parental protein coverage: | 86.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SDIYKIREIADGL-CEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFT |
S.IYKI.EI.DGL..E.E.K..SRTEGN.DDSL..GNASAEG.EG..T.STV..GVDIVMN..LQETSFT | |
Retrocopy | SNIYKIQEIMDGLGLEEEEKVISRTEGNTDDSLTDGNASAEGTEGKSTKSTVVSGVDIVMNPNLQETSFT |
Parental | KE-AYKKYIKDYMKSIKGKLEEQRPERVKP-FMTGAAEQIKHILANFKNYQFFIGANMNPDGMVALL-DY |
K................G..........KP.FMTG.AE.IKHILANFKNYQFFI.ANMNP.GMVALL... | |
Retrocopy | KQRGLQELYQRLYENNQGQI*RAKTRKSKP>FMTGVAEHIKHILANFKNYQFFIDANMNPNGMVALL<EC |
Parental | REDGVTPFMIF |
.EDGVTP...F | |
Retrocopy | HEDGVTPSL*F |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 377 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 916 .22 RPM |
SRP017611_liver | 0 .00 RPM | 886 .12 RPM |
SRP040447_lung | 0 .03 RPM | 996 .93 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 2302 .05 RPM |