RetrogeneDB ID: | retro_cpor_1053 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_41:3379738..3380144(-) | ||
Located in intron of: | ENSCPOG00000014253 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000020326 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TPT1 | ||
Ensembl ID: | ENSCPOG00000009278 | ||
Aliases: | None | ||
Description: | translationally-controlled tumor protein [Source:RefSeq peptide;Acc:NP_001166553] |
Percent Identity: | 58.27 % |
Parental protein coverage: | 80.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MSDIYKIREIADGLC-EVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSF |
.S..YK...IAD.LC..V.GKMVSRT....D..LIGGN..A.GP.GEGT..T..TG..IVM.H.LQETSF | |
Retrocopy | VSNSYKFWKIADRLCLKV*GKMVSRTQCDTDNWLIGGNVPAKGPQGEGTKRTAVTGAEIVMHHCLQETSF |
Parental | TKEAYKKYIKDYMKSI-KGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGANMNPDGMVALLDY |
TKE..K.Y..D.MK.I.K..L....P......MTGAAEQI.H.LANF..Y..F.GANMNP.G..ALLDY | |
Retrocopy | TKETWK-YMTDDMKPI>KANLKNKDPKE*D--MTGAAEQIQHMLANFQSYWIFLGANMNPNGLAALLDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 377 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 916 .22 RPM |
SRP017611_liver | 0 .00 RPM | 886 .12 RPM |
SRP040447_lung | 0 .00 RPM | 996 .93 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 2302 .05 RPM |