Parental gene:

HNRNPA2B1, ENSTTRG00000000709

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_142:82627..90379(-)


>ENSTTRG00000000709
GTTAGTCGGGGGGAAGGTTCTAGAAAAGCGGCGGCAGCGGCTCTAGCGGCAGTAGCAGCAGCGCCGGGTCCAGAGTGGAG
GTGCTCCCGGTGTTGTTTCTCGACCAGCGGCAGTTCTCACTACAGCGCCAGGACGAGTCCGGTTCGTGTTCGTCCGCGGA
GATCTCTCTCATCTCGCTCGGCTGCGGGAAATCGGGCTGAAGCGACTGAGTCCGCGATGGAGAGAGAAAAGGAACAATTC
CGTAAACTCTTTATTGGTGGCTTGAGCTTTGAAACTACAGAAGAAAGTTTGAGGAACTACTACGAGCAATGGGGGAAACT
TACAGATTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCATCCATGGCTG
AGGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCAAAACGTGCTGTTGCAAGAGAG
GAATCTGGAAAGCCAGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTAGGTGGAATTAAAGAAGATACTGAGGAACATCA
TCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACCATTGAGATAATTACCGATAGGCAGTCTGGAAAGAAAAGAG
GCTTTGGGTTTGTTACTTTTGATGACCATGATCCTGTGGATAAGATTGTGTTGCAGAAATACCATACTATCAATGGTCAT
AATGCAGAAGTAAGGAAGGCTTTATCTAGACAAGAAATGCAGGAAGTCCAAAGTTCTAGAAGTGGAAGAGGAGGCAACTT
TGGTTTTGGAGATTCTCGTGGTGGTGGTGGAAATTTTGGACCAGGACCAGGAAGTAACTTCAGAGGAGGATCTGATGGAT
ATGGAAGTGGTCGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCT
GGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTA
TGACAACTATGGAGGAGGAAATTATGGAAGTGGAAATTATAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACG
GTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGAAACATGGGAGGACCATATGGTGGAGGAAACTATGGTCCAGGAGGC
AGTGGAGGAAGTGGGGGTTATGGAGGGAGAAGCCGATATTGA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000001793 within_species_paralog 2 retrogenes
retro_ttru_1486, retro_ttru_744,
Tursiops truncatus ENSTTRG00000004505 other_paralog 27 retrogenes
retro_ttru_1202, retro_ttru_1223, retro_ttru_1251, retro_ttru_1331, retro_ttru_1362, retro_ttru_156, retro_ttru_157, retro_ttru_1678, retro_ttru_1732, retro_ttru_1806, retro_ttru_1813, retro_ttru_1874, retro_ttru_221, retro_ttru_311, retro_ttru_479, retro_ttru_599, retro_ttru_605, retro_ttru_607, retro_ttru_620, retro_ttru_63, retro_ttru_678, retro_ttru_708, retro_ttru_812, retro_ttru_882, retro_ttru_902, retro_ttru_926, retro_ttru_981,
Tursiops truncatus ENSTTRG00000007592 within_species_paralog 1 retrogene
retro_ttru_1913,
Tursiops truncatus ENSTTRG00000014225 other_paralog 3 retrogenes
retro_ttru_1459, retro_ttru_675, retro_ttru_9,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ttru_1066 69.68 74.33
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2. retro_ttru_1204 89.89 66.83
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3. retro_ttru_1788 83.39 65.86
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Download FASTA sequences of all ENSTTRG00000000709 retrocopies