RetrogeneDB ID: | retro_btau_1535 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:43551338..43552134(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000020849 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSBTAG00000005726 | ||
Aliases: | HNRNPA2B1, HNRPA2B1 | ||
Description: | Heterogeneous nuclear ribonucleoproteins A2/B1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ60] |
Percent Identity: | 75.28 % |
Parental protein coverage: | 77.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP |
..E.EQFRKLFIGGLS.ETTEESLRNYY.QWGKL..C...RD.ASKRSRGFGFVTFSSMAEVDAAMAARP | |
Retrocopy | KKEQEQFRKLFIGGLSSETTEESLRNYYKQWGKLISCEIIRDHASKRSRGFGFVTFSSMAEVDAAMAARP |
Parental | HSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKR |
HSIDG....PKRAV.REESG..G...TVKKLFVGGI.EDTEEHHLR.YFE.YGKID.IEIITDR.SG.KR | |
Retrocopy | HSIDGKTIAPKRAVPREESGQRGVFLTVKKLFVGGI-EDTEEHHLRYYFEKYGKIDAIEIITDRESGRKR |
Parental | GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGP |
GFGFVTFDDHDPVDKIVLQK.H.INGH.AEVRKA.SR..MQ.VQ.SRS.RG.N.GFGDS.G..GN.GPG. | |
Retrocopy | GFGFVTFDDHDPVDKIVLQKNHIINGHQAEVRKAFSRPKMQQVQHSRSRRGDNAGFGDSPGDDGNVGPGS |
Parental | --GSNFRGGSDGYGSGR-GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYG |
..GS.F.G.SDG..SG..G.G.GYN..G..PG.GN.G.SPGY.GG.G.YGGG..GYG | |
Retrocopy | RRGSSFGGRSDGLRSGQ>GLGHGYNRCGE*PGSGNLGVSPGYEGGKGAYGGGQLGYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 258 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 291 .24 RPM |
SRP017611_brain | 0 .00 RPM | 456 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 497 .29 RPM |
SRP017611_liver | 0 .00 RPM | 221 .99 RPM |
SRP030211_testis | 0 .01 RPM | 451 .98 RPM |