Parental gene:

HNRNPA2B1, ENSFCAG00000027765

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Organism:Cat (Felis catus)
Coordinates:A2:118284086..118294672(-)


>ENSFCAG00000027765
ATGGAGAAAACTTTAGAAACTGTTCCTTTGGAGAGGAAAAAGAGAGAAAAGGAACAGTTCCGTAAACTTTTTATTGGTGG
CTTGAGCTTTGAAACCACAGAAGAAAGTTTGAGGAACTACTACGAGCAATGGGGGAAACTTACAGACTGTGTGGTCATGA
GAGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTTTTGTAACTTTTTCGTCCATGGCTGAGGTTGACGCTGCCATGGCT
GCAAGACCTCATTCAATTGATGGGAGAGTGGTTGAGCCAAAACGTGCTGTTGCAAGAGAGGAATCTGGAAAGCCAGGGGC
TCATGTAACAGTGAAGAAGCTGTTTGTTGGTGGAATTAAAGAAGATACTGAGGAACATCATCTTAGAGATTACTTCGAAG
AGTATGGAAAGATTGATACCATTGAGATAATTACTGATAGGCAGTCTGGAAAGAAAAGAGGCTTTGGATTTGTTACCTTT
GATGATCATGATCCCGTGGATAAGATTGTGTTGCAGAAATATCATACCATCAATGGTCATAATGCAGAAGTAAGAAAGGC
TCTGTCTAGACAAGAAATGCAGGAAGTCCAGAGTTCTAGAAGTGGAAGAGGAGGCAACTTCGGTTTTGGAGATTCTCGTG
GTGGTGGTGGAAATTTTGGACCAGGCCCGGGAAGTAACTTTAGAGGAGGATCTGATGGATATGGAAGTGGTCGCGGATTT
GGGGATGGCTATAATGGGTATGGAGGAGGACCTGGAGGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGG
AGGATATGGTGGTGGAGGACCTGGATATGGCAACCAGGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAA
ATTACGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTATGGTCCAATGAAGAGTGGAAAC
TTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAGGAAACTATGGTCCTGGAGGCAGTGGAGGAAGTGGGGGTTA
TGGAGGGAGAAGCCGATATTGA

Library Parental gene expression (RPM)
SRP017611_liver 458 .44 RPM
SRP017611_kidney 784 .17 RPM
SRP017611_brain 529 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 ortholog_one2one 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000000455 within_species_paralog 1 retrogene
retro_fcat_1568,
Felis catus ENSFCAG00000010150 other_paralog 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Felis catus ENSFCAG00000012146 other_paralog 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_692 68.85 50.99
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Download FASTA sequences of all ENSFCAG00000027765 retrocopies