RetrogeneDB ID: | retro_btau_193 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:18508982..18510041(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000002284 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA2B1 | ||
Ensembl ID: | ENSBTAG00000005726 | ||
Aliases: | HNRNPA2B1, HNRPA2B1 | ||
Description: | Heterogeneous nuclear ribonucleoproteins A2/B1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ60] |
Percent Identity: | 73.26 % |
Parental protein coverage: | 99.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARP |
..E.EQ.RKLFIGGLS.ETTEESL.NYY.QWG.LTDCVV.R..AS..SRGFGFVTFSS.AEVDAAMAARP | |
Retrocopy | KKENEQIRKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAARP |
Parental | HSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKR |
HSIDGRVV.PKRAV.RE.S.K.G..V.VKKLFVGGIKEDTEEHHLR.YFE.YGKID.IEIITDRQSGKKR | |
Retrocopy | HSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKR |
Parental | GFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGP |
GFGFVTFDD.DPVDKI.LQKYH.INGH.AEV.KALSRQEM.E.Q..RS..GG.FGF..S..GGGNFG.GP | |
Retrocopy | GFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKALSRQEMKEIQGPRSRKGGPFGFSVSSNGGGNFGRGP |
Parental | GSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGR-GGY---GGGGPGYGNQGGGYGGGYDN |
G..FRG..DGYG.G....DG..GYGGGPGGGNFGG.P.YGGG..GGY...GGGG..Y.....GYG..... | |
Retrocopy | GTKFRGEADGYGNGPESRDGCHGYGGGPGGGNFGGYPCYGGGNFGGYPCYGGGGGEYAGRRPGYGNQWE- |
Parental | YGGGNYGSGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY |
..GG.YG....N.FGNY.QQPSNYGPM..G.FG..RN...PYGGGNYGPGG.GGSGGYGG.S.Y | |
Retrocopy | FSGGGYG----NNFGNYDQQPSNYGPMRNGIFGVGRNIVAPYGGGNYGPGGNGGSGGYGGGSGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 258 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 291 .24 RPM |
SRP017611_brain | 0 .05 RPM | 456 .29 RPM |
SRP017611_kidney | 0 .06 RPM | 497 .29 RPM |
SRP017611_liver | 0 .00 RPM | 221 .99 RPM |
SRP030211_testis | 12 .65 RPM | 451 .98 RPM |