RetrogeneDB ID: | retro_amel_1481 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193475.1:152857..153344(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000005911 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSAMEG00000000526 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase H (cyclophilin H) [Source:HGNC Symbol;Acc:14651] |
Percent Identity: | 87.12 % |
Parental protein coverage: | 91.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DVSIGGQEVGRM-KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG |
DVS.GGQEVG...KIE.F.D.VPKTAENF.QFCTGEFRKDGV.I.YKGSTFHRVIKDFMIQ.GDFVNGDG | |
Retrocopy | DVSTGGQEVGHI>KIEIFTDIVPKTAENFMQFCTGEFRKDGVLIVYKGSTFHRVIKDFMIQDGDFVNGDG |
Parental | TGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKI |
TGVASIYRGPFADENFK.RHSAPGLLSMANSG.STN.CQ.FIT.SKCDWLDGKH.V.GKIID.LLVMRKI | |
Retrocopy | TGVASIYRGPFADENFKSRHSAPGLLSMANSGSSTNDCQAFITYSKCDWLDGKHAVLGKIIDKLLVMRKI |
Parental | ENVPTGPNNKPKLPVVISQCGEM |
ENVPTGPNNK.KLPVVISQCG.M | |
Retrocopy | ENVPTGPNNKHKLPVVISQCGKM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |