RetrogeneDB ID: | retro_itri_1248 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393411.1:2389115..2389528(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000028336 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSSTOG00000000115 | ||
Aliases: | None | ||
Description: | peptidylprolyl isomerase H (cyclophilin H) [Source:HGNC Symbol;Acc:14651] |
Percent Identity: | 69.5 % |
Parental protein coverage: | 77.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VANSSPVNP-VVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD-GVPIGYKGSTFHRVIK |
VANSS.VN...VFFDVS...QEVG.MKI.LFAD.VPKT..NFRQFCTGE..K..G......GSTF..VIK | |
Retrocopy | VANSSSVNT<IVFFDVSFFNQEVGHMKIQLFADIVPKTTKNFRQFCTGEIQKRWGAHRKQRGSTFLVVIK |
Parental | DFMIQGGDFVNGDGTGVASIYR-GPFADENFKLRHSAPGL-LSMANSGPSTNGCQFFITCSKCDWLDGKH |
DFMI.G.D.VNG..T.V.SIY..GPFADE.FKLRH.APGL.LSM..SGPSTN..QFFITC.KCDWL.GKH | |
Retrocopy | DFMI*GRDIVNGGST*VVSIYL>GPFADEKFKLRHLAPGL<LSMVSSGPSTNNHQFFITCYKCDWLGGKH |
Parental | V |
. | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |