RetrogeneDB ID: | retro_dord_447 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_19474:11522..12053(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppih | ||
Ensembl ID: | ENSDORG00000016152 | ||
Aliases: | None | ||
Description: | peptidyl prolyl isomerase H [Source:MGI Symbol;Acc:MGI:106499] |
Percent Identity: | 79.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK |
M.VAN.SP.NP...FDVSI.GQEVG.MKIELFADVV..T.ENFRQFCT.EFRKDGVPIGYKGSTFH.VIK | |
Retrocopy | MMVANVSPINPIMLFDVSISGQEVGHMKIELFADVVLQTTENFRQFCTEEFRKDGVPIGYKGSTFHMVIK |
Parental | DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHS-APGLLSMANSGPSTNGCQFFITCSKCDWLDGKHV |
.F.IQGG.FVNGDGTGVASIY..PFADENF.LR...APGLLSMAN.GPS.NG.QFFI.C..CDWLDGKHV | |
Retrocopy | GFLIQGGNFVNGDGTGVASIYQRPFADENFTLRLR<APGLLSMANRGPSKNGGQFFISCCNCDWLDGKHV |
Parental | V-FGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
V.FGKIIDGLL.MRKIENVP.GPN.KPKLPVVIS..G.. | |
Retrocopy | V>FGKIIDGLLAMRKIENVPIGPNKKPKLPVVISVWGDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |