RetrogeneDB ID: | retro_ggor_748 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:109815797..109816327(-) | ||
Located in intron of: | ENSGGOG00000002519 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSGGOG00000022507 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:G3SD72] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK |
M.VA.SSP.NP.VFFDVS.G.QEVGR.KIEL.ADVVPKT.ENF..FCT.EFRKDGVPIGYKGSTFHRVIK | |
Retrocopy | MVVATSSPANPMVFFDVSNGSQEVGRTKIELSADVVPKTTENFG*FCTREFRKDGVPIGYKGSTFHRVIK |
Parental | DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
DFMI.GGDFVNGDGTGV.SIY...FADENFKLRHSAPGLLS.ANSGPS.NGCQFFITC.KCDWLDGKHV. | |
Retrocopy | DFMI*GGDFVNGDGTGVTSIYQETFADENFKLRHSAPGLLSTANSGPSINGCQFFITCCKCDWLDGKHVM |
Parental | FGKIIDGLLVMRKIENVPTGPNNKPKL-PVVISQCGEM |
FGKI.DGLLVMRKIENVPTGP.NKPKL..VVIS.C.EM | |
Retrocopy | FGKITDGLLVMRKIENVPTGPKNKPKL<TVVISKCREM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 13 .14 RPM |
SRP007412_cerebellum | 0 .04 RPM | 10 .40 RPM |
SRP007412_heart | 0 .09 RPM | 6 .54 RPM |
SRP007412_kidney | 0 .04 RPM | 12 .84 RPM |
SRP007412_liver | 0 .03 RPM | 11 .53 RPM |
SRP007412_testis | 0 .21 RPM | 15 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_928 |
Pan troglodytes | retro_ptro_644 |
Pongo abelii | retro_pabe_797 |
Macaca mulatta | retro_mmul_1124 |