RetrogeneDB ID: | retro_cpor_794 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_28:25572398..25572681(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSCPOG00000008214 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H0VBU7] |
Percent Identity: | 76.84 % |
Parental protein coverage: | 52.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELFADVVPKTAENFRQFCTGEFRKDGVPIG-YKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADE |
E.F.DV..KTA.NFRQFCTGEF.K.G.PIG.YK.STFHR.IKDFMIQG.DFV.GDGTGVASIY..PFA.. | |
Retrocopy | EIFEDVMLKTAKNFRQFCTGEFTKGGAPIG>YKESTFHRGIKDFMIQGEDFVKGDGTGVASIYQNPFAH* |
Parental | NF-KLRHSAPGLLSMANSGPSTNGC |
N...LR..APGLLSMANSGPSTNGC | |
Retrocopy | NLRRLRP*APGLLSMANSGPSTNGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 9 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .83 RPM |
SRP017611_liver | 0 .00 RPM | 9 .66 RPM |
SRP040447_lung | 0 .18 RPM | 11 .80 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 5 .51 RPM |