RetrogeneDB ID: | retro_hsap_928 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:111900561..111901091(-) | ||
Located in intron of: | ENSG00000150768 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000230911 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPIH | ||
Ensembl ID: | ENSG00000171960 | ||
Aliases: | PPIH, CYP-20, CYPH, SnuCyp-20, USA-CYP | ||
Description: | peptidylprolyl isomerase H (cyclophilin H) [Source:HGNC Symbol;Acc:14651] |
Percent Identity: | 87.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIK |
M.VA.SSP.NP.VFFDVS.G.QEVGR.KIEL.ADVVPKT.ENF..FCT.EFRKDGVPIGYKGSTFHRVIK | |
Retrocopy | MVVATSSPANPMVFFDVSNGSQEVGRTKIELSADVVPKTTENFG*FCTREFRKDGVPIGYKGSTFHRVIK |
Parental | DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVV |
DFMI.GGDFVNGDGTGVASIY...FADENFKLRHSAPGLLS.ANSGPSTNGCQFFITCSKCDWLDGKHV. | |
Retrocopy | DFMI*GGDFVNGDGTGVASIYQETFADENFKLRHSAPGLLSTANSGPSTNGCQFFITCSKCDWLDGKHVM |
Parental | FGKIIDGLLVMRKIENVPTGPNNKPKL-PVVISQCGEM |
FGKI.DGLLVMRKI.NVPTGPNNKPKL..VVIS.CGEM | |
Retrocopy | FGKITDGLLVMRKIQNVPTGPNNKPKL<TVVISKCGEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .79 RPM |
bodymap2_adrenal | 0 .47 RPM | 22 .91 RPM |
bodymap2_brain | 0 .00 RPM | 10 .95 RPM |
bodymap2_breast | 0 .12 RPM | 11 .56 RPM |
bodymap2_colon | 0 .04 RPM | 10 .98 RPM |
bodymap2_heart | 0 .15 RPM | 6 .09 RPM |
bodymap2_kidney | 0 .19 RPM | 7 .65 RPM |
bodymap2_liver | 0 .00 RPM | 4 .10 RPM |
bodymap2_lung | 0 .14 RPM | 10 .72 RPM |
bodymap2_lymph_node | 0 .00 RPM | 15 .11 RPM |
bodymap2_ovary | 0 .08 RPM | 15 .61 RPM |
bodymap2_prostate | 0 .02 RPM | 13 .28 RPM |
bodymap2_skeletal_muscle | 0 .13 RPM | 3 .53 RPM |
bodymap2_testis | 0 .04 RPM | 21 .29 RPM |
bodymap2_thyroid | 0 .13 RPM | 15 .52 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 15 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_644 |
Gorilla gorilla | retro_ggor_748 |
Pongo abelii | retro_pabe_797 |
Macaca mulatta | retro_mmul_1124 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .10 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .05 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .14 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .10 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .11 RPM |
GBR_HG00119 | 0 .12 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .14 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .06 RPM |
TSI_NA20512 | 0 .08 RPM |
TSI_NA20513 | 0 .10 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .05 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .06 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .04 RPM |