RetrogeneDB ID: | retro_dord_151 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3930:87375..87902(-) | ||
Located in intron of: | ENSDORG00000006095 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ppih | ||
Ensembl ID: | ENSDORG00000016152 | ||
Aliases: | None | ||
Description: | peptidyl prolyl isomerase H [Source:MGI Symbol;Acc:MGI:106499] |
Percent Identity: | 84.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAVANSSPVNPVVFFDVSIGGQEVGRM-KIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI |
M.VANSSP.NP.VFFDVSIGGQE.G...KIELFADVV.KTA.NFRQFCTGEFRKDGVPIGY.GSTFHRVI | |
Retrocopy | MVVANSSPINPIVFFDVSIGGQEIGCV<KIELFADVVSKTA-NFRQFCTGEFRKDGVPIGY*GSTFHRVI |
Parental | KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHV |
KDFMI.GGD.VNG.GTGVASIY.G.....NFKL.HSAP..LS.A.SGPSTNGCQFFITCSKCDWLDGKHV | |
Retrocopy | KDFMI*GGDLVNGYGTGVASIYQGHLQMKNFKLKHSAPCPLSLASSGPSTNGCQFFITCSKCDWLDGKHV |
Parental | VFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM |
VFGKIIDGLLVMRKIENVPT..NNKPKLPVVISQCG.M | |
Retrocopy | VFGKIIDGLLVMRKIENVPTVLNNKPKLPVVISQCGVM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |