RetrogeneDB ID: | retro_amel_914 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192741.1:878017..878587(-) | ||
Located in intron of: | ENSAMEG00000010759 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSAMEG00000018435 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.62 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
MF.SS.KIVKPNG.KPD.FES.ISQALLELEMNS.LKAQL.ELNITA.KE.EVGGG..AI.IFV....LK | |
Retrocopy | MFCSSTKIVKPNGKKPDKFESSISQALLELEMNSHLKAQLQELNITATKETEVGGGQRAIAIFVSLSLLK |
Parental | SF-QKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT-KNKQKRPRSRTLTA-VHDAILEDLVFPS |
.F.Q.I.V....ELEKK.SGK..VFIAQRRILPKPT.KS.T.KN..K.PRS.T.TA..HD.ILEDLV.PS | |
Retrocopy | FF>QEILV---HELEKKLSGKPIVFIAQRRILPKPT*KSHT<KNQVKCPRSHTMTA>LHDTILEDLVLPS |
Parental | EIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVET-FSGVYKKLTGKDVNFEFPEFQ |
.IVGKRI.VKLDGS..IKVHL.KAQ.NNVEHK.ET.FSGV.K.LTG.DVNFEFPEFQ | |
Retrocopy | KIVGKRICVKLDGSWHIKVHLGKAQENNVEHKDET<FSGVHKRLTGRDVNFEFPEFQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018435 | 2 retrocopies |
retro_amel_391, retro_amel_914 ,
|
Callithrix jacchus | ENSCJAG00000016462 | 2 retrocopies | |
Felis catus | ENSFCAG00000023243 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000023095 | 13 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011870 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011615 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002071 | 7 retrocopies | |
Sus scrofa | ENSSSCG00000027353 | 5 retrocopies |