RetrogeneDB ID: | retro_lafr_413 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_15:54620574..54621140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000027119 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSLAFG00000015087 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.47 % |
Parental protein coverage: | 98.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | SSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVP-VPQLKS |
SSS.K..KPN..K.DEF.SG.SQALLELEMNSD.K.QLREL..T.AKE.EVGGG.KA.IIFVP.VP.LKS | |
Retrocopy | SSSEKTAKPNVDKTDEFKSGVSQALLELEMNSDIKVQLRELHVTTAKEVEVGGGQKASIIFVP<VP*LKS |
Parental | FQKI-QVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIV |
FQ.I.Q.RLV.E.EKKFSG.HVVFIAQ.RI...P.RK..T.NKQK.PRSRTL.AV..AI.EDLV.PSEIV | |
Retrocopy | FQNI<QIRLVCEPEKKFSGNHVVFIAQGRI--QPNRKRHTENKQKPPRSRTLRAVYNAIIEDLVLPSEIV |
Parental | GKRIRVKLDGSRLIKVHLDKAQQNNVE-HK-VETFSGVYKKLTGKDVNFEFPEFQL |
GKRI.VKLD.S....VHLDKAQQNNV..H..VETFSGV.KK.TGK.VNFEFPEF.L | |
Retrocopy | GKRICVKLDDSWFRNVHLDKAQQNNVD<HR<VETFSGVCKKPTGKVVNFEFPEFPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |