RetrogeneDB ID:

retro_pvam_887

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_14964:17672..18004(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000002071
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_887
ATTAGGGCCCTGCTAAGTTTGCTGAATATAACAGCAGCCAAGGAGATTAAAGTTGATGGCAGTCAGAAAGCTATTTTGAC
CTTTGTTCCTATTCTTCAATGAAATCTTCCCAGAAAAACCAAGTCTGGTAAGTACTGAAATTGGAGGAAAAGTTCAGTGG
GAAGCACATTGTCTCTAATGCTCAAAGAAGAGTTCTGCCTAAGCTAACTCAAAAAAACTTTACAAAAATAAGCAAAAGTA
TCCCAGAAACTACACACTCTGACAGCTGTGCAACTGTGATCCTGGAGGACTTAGTCTTTCTAAGTGAAATTGCCGGCAAG
AGAATCCAGGTG

ORF - retro_pvam_887 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.4 %
Parental protein coverage: 57.22 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQ-LKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKP
..A.L..LNITAAKEI.V.G..KAI..FVP..Q..KS.QK.QV..V..LE.KFSGKH.V..AQRR.LPK.
RetrocopyIRALLSLLNITAAKEIKVDGSQKAILTFVPILQ<MKSSQKNQVW*VLKLEEKFSGKHIVSNAQRRVLPKL
ParentalTRKSRTK-NKQKRPRSRTL-TAVHDAILEDLVFPSEIVGKRIRV
T.K..TK.NKQK.PR..TL.......ILEDLVF.SEI.GKRI.V
RetrocopyTQKNFTK<NKQKYPRNYTL>DSCATVILEDLVFLSEIAGKRIQV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_887 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000184352 retrocopies
Bos taurus ENSBTAG000000162245 retrocopies
Canis familiaris ENSCAFG000000032631 retrocopy
Cavia porcellus ENSCPOG000000097952 retrocopies
Dasypus novemcinctus ENSDNOG0000001328514 retrocopies
Equus caballus ENSECAG000000202532 retrocopies
Felis catus ENSFCAG000000232432 retrocopies
Gorilla gorilla ENSGGOG0000002309513 retrocopies
Macaca mulatta ENSMMUG000000118707 retrocopies
Monodelphis domestica ENSMODG000000144952 retrocopies
Mus musculus ENSMUSG000000614772 retrocopies
Nomascus leucogenys ENSNLEG0000001540710 retrocopies
Oryctolagus cuniculus ENSOCUG000000085072 retrocopies
Pongo abelii ENSPPYG0000002587212 retrocopies
Pteropus vampyrus ENSPVAG00000002071 7 retrocopies
Rattus norvegicus ENSRNOG000000085512 retrocopies
Sus scrofa ENSSSCG000000273535 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000248303 retrocopies
Tursiops truncatus ENSTTRG000000016166 retrocopies



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