RetrogeneDB ID:

retro_ggor_400

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:70375901..70376482(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS7
Ensembl ID:ENSGGOG00000023095
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_400
ATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCAATGGCGAGAAGCCAGAGGAGTTCGAGTCCGGCATCTCCCAGGCTCT
TCTGGAGCTGGAGATGAGCTCAGACCTCAAGGCTCAGCTCAGAGAGCTGAATATTACGGCAGCCAAGGAAATTGAAGTTG
GTAGTGGTCGGAAAGCTATCATAATATTTGTTCCCGTTCCTTAACTGAAATCTTTCCAGAAAATCCAAGTCCAGCTAGTA
GCGAATTGGAGAAAAAGTTCAGTGGGAAGCATGTCGTCTTTATCGCTCAGAGGAGAATTCTGCCTAAGCCAACTCGAAAA
AGCTGTACGAAAAATAAGCAAAAGCATCCCAGGAGCCGTGCCCTGACAGCTGTGCACGACGCAATCCTTGAGGACTTGGT
CTTCCCAAGTGAAATTGTGGGCAAGAGAATCCGCATGAAACTGGACGGTGGCCTGCTCATAAAGCTTCATTTGAACAAAG
CACAGCAGAACAATGTGGAACATAAAGTTAAAATTTTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGATGTTAATTTT
GAATTCCCAGAGTTTCAATTG

ORF - retro_ggor_400 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.28 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK
MFSSSAKIVKPNGEKP.EFESGISQALLELEM.SDLKAQLRELNITAAKEIEVG.GRKAIIIFVPVP.LK
RetrocopyMFSSSAKIVKPNGEKPEEFESGISQALLELEMSSDLKAQLRELNITAAKEIEVGSGRKAIIIFVPVP*LK
ParentalSFQKIQVRLVR-ELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEI
SFQKIQV.LV..ELEKKFSGKHVVFIAQRRILPKPTRKS.TKNKQK.PRSR.LTAVHDAILEDLVFPSEI
RetrocopySFQKIQVQLVA<ELEKKFSGKHVVFIAQRRILPKPTRKSCTKNKQKHPRSRALTAVHDAILEDLVFPSEI
ParentalVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL
VGKRIR.KLDG..LIK.HL.KAQQNNVEHKV..FSGVYKKLTGKDVNFEFPEFQL
RetrocopyVGKRIRMKLDGGLLIKLHLNKAQQNNVEHKVKIFSGVYKKLTGKDVNFEFPEFQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 49 .73 RPM
SRP007412_cerebellum 0 .04 RPM 84 .31 RPM
SRP007412_heart 0 .00 RPM 35 .52 RPM
SRP007412_kidney 0 .04 RPM 189 .03 RPM
SRP007412_liver 0 .03 RPM 183 .46 RPM
SRP007412_testis 0 .00 RPM 82 .36 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_400 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_400 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 19 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000184352 retrocopies
Bos taurus ENSBTAG000000162245 retrocopies
Canis familiaris ENSCAFG000000032631 retrocopy
Cavia porcellus ENSCPOG000000097952 retrocopies
Dasypus novemcinctus ENSDNOG0000001328514 retrocopies
Equus caballus ENSECAG000000202532 retrocopies
Felis catus ENSFCAG000000232432 retrocopies
Gorilla gorilla ENSGGOG00000023095 13 retrocopies
Macaca mulatta ENSMMUG000000118707 retrocopies
Monodelphis domestica ENSMODG000000144952 retrocopies
Mus musculus ENSMUSG000000614772 retrocopies
Nomascus leucogenys ENSNLEG0000001540710 retrocopies
Oryctolagus cuniculus ENSOCUG000000085072 retrocopies
Pongo abelii ENSPPYG0000002587212 retrocopies
Pteropus vampyrus ENSPVAG000000020717 retrocopies
Rattus norvegicus ENSRNOG000000085512 retrocopies
Sus scrofa ENSSSCG000000273535 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000248303 retrocopies
Tursiops truncatus ENSTTRG000000016166 retrocopies



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