RetrogeneDB ID: | retro_fcat_1534 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D3:16623266..16623674(-) | ||
Located in intron of: | ENSFCAG00000026324 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000023243 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.72 % |
Parental protein coverage: | 73.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTL |
V.GG.KAIIIFV..PQLKSFQKIQV.LV..LEKKFSGK...FIAQ.........K..TKNKQ......TL | |
Retrocopy | VSGGQKAIIIFVCIPQLKSFQKIQVQLVSKLEKKFSGKYDIFIAQSCL--SQLKKHCTKNKQ---AFHTL |
Parental | TAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEF |
.AVHDAILE.LVFPS.IV..R...KLDGS.LIKVHLDKA.QNNVEHK..TF..VY.KLTGKDVNFEFPEF | |
Retrocopy | AAVHDAILESLVFPSKIVHNRVHMKLDGSQLIKVHLDKA*QNNVEHKGKTFP-VYNKLTGKDVNFEFPEF |
Parental | QL |
.L | |
Retrocopy | HL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 78 .62 RPM |
SRP017611_kidney | 0 .21 RPM | 238 .27 RPM |
SRP017611_liver | 0 .00 RPM | 92 .09 RPM |