RetrogeneDB ID: | retro_ptro_202 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:132330245..132330558(+) | ||
Located in intron of: | ENSPTRG00000001372 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSPTRG00000011615 | ||
Aliases: | None | ||
Description: | Pan troglodytes ribosomal protein S7 (RPS7), mRNA. [Source:RefSeq mRNA;Acc:NM_001252001] |
Percent Identity: | 57.94 % |
Parental protein coverage: | 53.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SQALL-ELEMNSDLKAQLRELNITAAKEIEVGGGR-KAIIIFVPVPQLKSFQKIQVR-LVRELEKKFSGK |
SQALL..LE.N.DLKAQLRELN.TAAKEIEVGG.....II.FVP..QLKS.QKI.V..L..E.EKKF..K | |
Retrocopy | SQALL>NLEINWDLKAQLRELNRTAAKEIEVGGSH<RTIIMFVPISQLKSLQKI*VL>LACEWEKKFNEK |
Parental | HVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHD |
H..FI...RILPKP.............R...L.AVH. | |
Retrocopy | HISFIC*MRILPKPIXXXXXXXXXXCSRRCILIAVHN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 79 .49 RPM |
SRP007412_cerebellum | 0 .00 RPM | 27 .07 RPM |
SRP007412_heart | 0 .00 RPM | 17 .72 RPM |
SRP007412_kidney | 0 .00 RPM | 102 .93 RPM |
SRP007412_liver | 0 .00 RPM | 30 .70 RPM |
SRP007412_testis | 0 .00 RPM | 18 .76 RPM |