RetrogeneDB ID: | retro_lafr_786 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_38:14872485..14873075(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000031437 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSLAFG00000015087 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
MFSSS.KIVKP.GE.PDEF.SGISQALLELEMNSDLKAQLRELNI..AKEI.VGGG.KAIIIFVPVPQLK | |
Retrocopy | MFSSSTKIVKPSGEEPDEFKSGISQALLELEMNSDLKAQLRELNINIAKEIKVGGGQKAIIIFVPVPQLK |
Parental | SFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEI- |
SFQKIQ.RLV..LEK.FSGKH.VFIAQRRILPK.T.KS.TKNKQK.PRS.TLTA.HD.ILEDLVF.S.I. | |
Retrocopy | SFQKIQIRLVCKLEKNFSGKHIVFIAQRRILPKQTQKSHTKNKQKHPRSYTLTATHDTILEDLVFSSDIS |
Parental | --VGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKL-TGKDVNFEFPEFQL |
..VGKRIRVKLDGS.LIKV.LDKAQQNNVEHKVETFSGVYKKL..GKDVNFEFPEFQL | |
Retrocopy | DIVGKRIRVKLDGSWLIKVRLDKAQQNNVEHKVETFSGVYKKL<QGKDVNFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |