Parental gene:

RPS7, ENSSSCG00000027353

Aliases:None
Description:ribosomal protein S7 [Source:HGNC Symbol;Acc:10440]
Organism:Pig (Sus scrofa)
Coordinates:3:140517159..140521644(+)


>ENSSSCG00000027353
ATGTTCAGCTCCAGCGCGAAGATCGTGAAGCCCAATGGCGAGAAGCCGGACGAGTTCGAGTCGGGCATCTCCCAGGCCCT
CCTGGAGCTGGAGATGAACTCGGACCTCAAGGCCCAGCTGCGCGAGCTGAACATCACGGCCGCCAAGGAAATCGAAGTGG
GCGGCGGTCGGAAGGCCATCATCATCTTTGTGCCGGTGCCGCAACTGAAGTCCTTCCAGAAGATCCAAGTGCGGCTCGTG
CGCGAGCTGGAGAAGAAGTTCAGCGGGAAGCACGTGGTCTTCATCGCCCAGAGGAGAATTCTGCCCAAGCCAACTCGGAA
AAGCCGTACAAAAAATAAGCAGAAGCGTCCCAGAAGCCGCACGCTGACAGCCGTGCACGATGCCATCCTGGAGGACCTGG
TTTTCCCGAGTGAGATTGTGGGCAAGAGAATCCGCGTGAAGCTGGACGGCAGCCGCCTCATCAAGGTCCATTTGGACAAA
GCACAGCAGAACAACGTGGAGCACAAGGTTGAAACATTTTCTGGTGTCTATAAGAAGCTCACGGGCAAGGACGTTAATTT
TGAATTCCCAGAGTTTCAGTTATAA

Library Parental gene expression (RPM)
SRP014902_placenta 595 .70 RPM
SRP014902_testis 1672 .18 RPM
SRP018288_heart 389 .26 RPM
SRP018288_kidney 502 .67 RPM
SRP018288_liver 405 .85 RPM
SRP018288_lung 760 .34 RPM
SRP018856_adipose 801 .54 RPM
SRP035408_brain 613 .80 RPM
SRP035408_liver 805 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000018435 ortholog_one2one 2 retrogenes
retro_amel_391, retro_amel_914,
Callithrix jacchus ENSCJAG00000016462 possible_ortholog 2 retrogenes
retro_cjac_16, retro_cjac_2287,
Dasypus novemcinctus ENSDNOG00000013285 possible_ortholog 14 retrogenes
retro_dnov_1091, retro_dnov_1351, retro_dnov_1388, retro_dnov_1459, retro_dnov_1688, retro_dnov_1849, retro_dnov_1940, retro_dnov_1970, retro_dnov_238, retro_dnov_2409, retro_dnov_558, retro_dnov_582, retro_dnov_623, retro_dnov_791,
Equus caballus ENSECAG00000020253 possible_ortholog 2 retrogenes
retro_ecab_276, retro_ecab_396,
Felis catus ENSFCAG00000023243 possible_ortholog 2 retrogenes
retro_fcat_1534, retro_fcat_41,
Gorilla gorilla ENSGGOG00000023095 possible_ortholog 13 retrogenes
retro_ggor_2028, retro_ggor_2090, retro_ggor_2161, retro_ggor_218, retro_ggor_2452, retro_ggor_2927, retro_ggor_294, retro_ggor_2965, retro_ggor_3047, retro_ggor_346, retro_ggor_400, retro_ggor_484, retro_ggor_597,
Loxodonta africana ENSLAFG00000015087 possible_ortholog 11 retrogenes
retro_lafr_1223, retro_lafr_160, retro_lafr_217, retro_lafr_318, retro_lafr_319, retro_lafr_413, retro_lafr_514, retro_lafr_720, retro_lafr_786, retro_lafr_964, retro_lafr_970,
Myotis lucifugus ENSMLUG00000006121 possible_ortholog 1 retrogene
retro_mluc_1118,
Macaca mulatta ENSMMUG00000011870 ortholog_one2one 7 retrogenes
retro_mmul_1831, retro_mmul_1846, retro_mmul_1929, retro_mmul_23, retro_mmul_2403, retro_mmul_2540, retro_mmul_357,
Nomascus leucogenys ENSNLEG00000015407 possible_ortholog 10 retrogenes
retro_nleu_1505, retro_nleu_1771, retro_nleu_1783, retro_nleu_2278, retro_nleu_2346, retro_nleu_2510, retro_nleu_2892, retro_nleu_3080, retro_nleu_817, retro_nleu_835,
Otolemur garnettii ENSOGAG00000028165 possible_ortholog 1 retrogene
retro_ogar_133,
Pan troglodytes ENSPTRG00000011615 possible_ortholog 3 retrogenes
retro_ptro_202, retro_ptro_3132, retro_ptro_58,
Pteropus vampyrus ENSPVAG00000002071 possible_ortholog 7 retrogenes
retro_pvam_1051, retro_pvam_1183, retro_pvam_1330, retro_pvam_1437, retro_pvam_207, retro_pvam_543, retro_pvam_887,
Ictidomys tridecemlineatus ENSSTOG00000024830 possible_ortholog 3 retrogenes
retro_itri_1147, retro_itri_1161, retro_itri_1215,
Tursiops truncatus ENSTTRG00000001616 possible_ortholog 6 retrogenes
retro_ttru_1422, retro_ttru_1659, retro_ttru_1706, retro_ttru_301, retro_ttru_323, retro_ttru_773,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_136 89.53 97.42
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2. retro_sscr_137 89.58 97.94
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3. retro_sscr_240 72.09 64.43
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4. retro_sscr_364 76.98 64.95
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5. retro_sscr_956 73.79 52.06
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Download FASTA sequences of all ENSSSCG00000027353 retrocopies