RetrogeneDB ID: | retro_btau_138 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:105171836..105172490(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000027213 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10A | ||
Ensembl ID: | ENSBTAG00000019494 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L10a [Source:UniProtKB/Swiss-Prot;Acc:Q5E9E6] |
Percent Identity: | 97.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD |
MSSKVSR.TLYEAVREVLHGNQRK.RKFLETV.LQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD | |
Retrocopy | MSSKVSRNTLYEAVREVLHGNQRKHRKFLETVKLQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGD |
Parental | QQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTH |
QQHCDEAKAVDIPH.DIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTH | |
Retrocopy | QQHCDEAKAVDIPHTDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTH |
Parental | NENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM |
NENMVAKV.EVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM | |
Retrocopy | NENMVAKVGEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTM |
Parental | GKPQRLY |
GKPQRLY | |
Retrocopy | GKPQRLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .65 RPM | 71 .95 RPM |
ERP005899_muscle | 1 .06 RPM | 878 .62 RPM |
SRP017611_brain | 0 .05 RPM | 58 .88 RPM |
SRP017611_kidney | 0 .36 RPM | 153 .22 RPM |
SRP017611_liver | 0 .38 RPM | 130 .48 RPM |
SRP030211_testis | 0 .13 RPM | 62 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019494 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012921 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000005760 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000013766 | 2 retrocopies | |
Mus musculus | ENSMUSG00000037805 | 8 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000014574 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002047 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001543 | 7 retrocopies |